diff --git a/mypy/errors.py b/mypy/errors.py
index 2c2c1e5ca227a..3d08144083908 100644
--- a/mypy/errors.py
+++ b/mypy/errors.py
@@ -668,6 +668,8 @@ def generate_unused_ignore_errors(self, file: str) -> None:
                 False,
                 False,
                 False,
+                origin=(self.file, None),
+                target=self.target_module,
             )
             self._add_error_info(file, info)
 
@@ -720,6 +722,8 @@ def generate_ignore_without_code_errors(
                 False,
                 False,
                 False,
+                origin=(self.file, None),
+                target=self.target_module,
             )
             self._add_error_info(file, info)
 
diff --git a/mypy/server/update.py b/mypy/server/update.py
index 00b823c99dfd0..d87e44b978635 100644
--- a/mypy/server/update.py
+++ b/mypy/server/update.py
@@ -1027,6 +1027,10 @@ def key(node: FineGrainedDeferredNode) -> int:
         if graph[module_id].type_checker().check_second_pass():
             more = True
 
+    graph[module_id].detect_possibly_undefined_vars()
+    graph[module_id].generate_unused_ignore_notes()
+    graph[module_id].generate_ignore_without_code_notes()
+
     if manager.options.export_types:
         manager.all_types.update(graph[module_id].type_map())