.travis.yml

# This is a special configuration file to run tests on Travis-CI via
# GitHub notifications when changes are committed.
#
# See http://travis-ci.org/ for details

# This file is heavily inspired by Peter Cock's efforts. See more details at
# http://blastedbio.blogspot.com/2013/09/using-travis-ci-for-testing-galaxy-tools.html

# We need Python 2.6 or 2.7 to run Galaxy but many Galaxy tools also need Java
# to run the simplest way to get that installed is to just start with "java".
# (which will still have a system python installed).
language: java
sudo: false

addons:
  apt:
    packages:
    - python-virtualenv
    - samtools
env:
 - DOWNLOAD_CACHE=$HOME/download_cache

before_install:
 - virtualenv planemo-venv
 - . planemo-venv/bin/activate
 - pip install --upgrade pip
 - pip install planemo
 - planemo travis_before_install
 - . ${TRAVIS_BUILD_DIR}/.travis/env.sh # source environment created by planemo
 - mkdir $DOWNLOAD_CACHE
install:
 - git clone https://github.com/mdshw5/sra-tools-galaxy.git
 - planemo dependency_script -r sra-tools-galaxy
 - . env.sh
 - bash dep_install.sh
script:
 - planemo test --install_galaxy ${TRAVIS_BUILD_DIR}