Skip to content
@maxplanck-ie

Max Planck Institute of Immunobiology and Epigenetics

Popular repositories Loading

  1. snakepipes snakepipes Public

    Customizable workflows based on snakemake and python for the analysis of NGS data

    Python 389 88

  2. parkour parkour Public archive

    Moved to: https://github.com/maxplanck-ie/parkour2

    JavaScript 33 15

  3. HiCAssembler HiCAssembler Public

    Software to assemble contigs/scaffolds into chromosomes using Hi-C data

    Python 27 4

  4. parkour2 parkour2 Public

    Parkour2: Laboratory Information Management System 👩🏻‍🔬 🧬 👨🏽‍💻

    Python 26 6

  5. rna-seq-qc rna-seq-qc Public

    Rna-seq pipeline, From FASTQ to differential expression analysis...

    Python 20 11

  6. 10X_snakepipe 10X_snakepipe Public

    A snakemake pipeline for 10X genomics cellranger

    Python 19 4

Repositories

Showing 10 of 35 repositories
  • snakepipes Public

    Customizable workflows based on snakemake and python for the analysis of NGS data

    maxplanck-ie/snakepipes’s past year of commit activity
    Python 389 88 45 2 Updated Nov 29, 2024
  • parkour2 Public

    Parkour2: Laboratory Information Management System 👩🏻‍🔬 🧬 👨🏽‍💻

    maxplanck-ie/parkour2’s past year of commit activity
    Python 26 6 0 0 Updated Nov 29, 2024
  • BigRedButton Public

    1. Push button 2. Get results 3. Publish

    maxplanck-ie/BigRedButton’s past year of commit activity
    Python 0 0 4 2 Updated Nov 22, 2024
  • 10X_snakepipe Public

    A snakemake pipeline for 10X genomics cellranger

    maxplanck-ie/10X_snakepipe’s past year of commit activity
    Python 19 4 1 0 Updated Nov 11, 2024
  • nanoporeReads_dataTransfer Public

    A pipeline to transfer the Nanopore reads to end users

    maxplanck-ie/nanoporeReads_dataTransfer’s past year of commit activity
    Python 0 MIT 4 19 (1 issue needs help) 0 Updated Oct 29, 2024
  • HiCAssembler Public

    Software to assemble contigs/scaffolds into chromosomes using Hi-C data

    maxplanck-ie/HiCAssembler’s past year of commit activity
    Python 27 4 18 0 Updated Sep 26, 2024
  • Rseurat Public

    Single Cell RNA-seq Course

    maxplanck-ie/Rseurat’s past year of commit activity
    R 3 GPL-3.0 0 1 0 Updated Sep 18, 2024
  • dissectBCL Public

    demultiplexing pipeline

    maxplanck-ie/dissectBCL’s past year of commit activity
    Python 1 1 11 0 Updated Aug 26, 2024
  • Pore-C-Snakemake Public Forked from nanoporetech/Pore-C-Snakemake

    Fork of Pore-C-Snakemake for running on the MPI cluster

    maxplanck-ie/Pore-C-Snakemake’s past year of commit activity
    Python 0 15 0 1 Updated Jul 19, 2024
  • snakequest Public

    A shiny app that collects user input required for running snakepipes.

    maxplanck-ie/snakequest’s past year of commit activity
    R 3 0 0 0 Updated Jun 13, 2024

Top languages

Loading…

Most used topics

Loading…