diff --git a/README.md b/README.md index 071aa5d..b4081d9 100644 --- a/README.md +++ b/README.md @@ -10,7 +10,7 @@ Check out [instructions](https://github.com/martinjzhang/scDRS/issues/2) for mak -- v1.0.1: identical to `v1.0.0` except documentation, minted for publication. +- v1.0.1: current version, identical to `v1.0.0` except documentation, minted for publication. - [v1.0.0](https://github.com/martinjzhang/scDRS/releases/tag/v1.0.0): stable version used in revision 1. Results are identical to `v0.1` for binary gene sets. Changes with respect to `v0.1`: - scDRS command-line interface (CLI) instead of `.py` scripts for calling scDRS in bash, including `scdrs munge-gs`, `scdrs compute-score`, and `scdrs perform-downstream`. - More efficient in memory use due to the use of sparse matrix throughout the computation. @@ -30,7 +30,7 @@ Check out [instructions](https://github.com/martinjzhang/scDRS/issues/2) for mak ## References -[Zhang*, Hou*, et al. “Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data"](https://www.biorxiv.org/content/10.1101/2021.09.24.461597v2), accepted in principle at Nat Genet. +[Zhang*, Hou*, et al. “Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data"](https://www.biorxiv.org/content/10.1101/2021.09.24.461597v2), accepted in principle at Nat Genet, 2022. ### Code and data to reproduce results of the paper See [scDRS_paper](https://github.com/martinjzhang/scDRS_paper) for more details ([experiments](./experiments) folder is deprecated). Data are at [figshare](https://figshare.com/projects/Single-cell_Disease_Relevance_Score_scDRS_/118902).