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Issues: markovmodel/PyEMMA

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Issues list

Refactoring pyemma.plots.markovtests.py feature-request low-prio plots
#1353 opened Aug 31, 2018 by cwehmeyer
Hidden path / Viterbi path in models feature-request
#378 opened Jun 25, 2015 by franknoe
Microstate label and connected set discussion feature-request low-prio
#866 opened Jul 11, 2016 by franknoe
3
Not possible to set a prior for the emission matrix feature-request
#950 opened Sep 30, 2016 by greenTara
1
Continuous time MSM feature-request
#951 opened Oct 2, 2016 by MamtaMohan
23
Implement Laio density based clustering algorithm coordinates feature-request
#998 opened Nov 30, 2016 by marscher
5
Fast kmeans++ coordinates feature-request
#1003 opened Dec 6, 2016 by franknoe
3
Order of coarse grained states in coarse grained flux unclear feature-request
#1004 opened Dec 6, 2016 by nsplattner
@clonker
5
provide convenience function to plot TICA.timescales (eg. like for ITS) feature-request
#1099 opened May 22, 2017 by marscher
3
Invoking parent classes constructors inconsistency because of super() usage bug design-discussion
#1153 opened Aug 30, 2017 by marscher
2
ITS/MSM: allow to extend nsamples for error='bayes' a posteriori? design-discussion enhancement feature-request msm
#1157 opened Sep 11, 2017 by gph82
4
BHMM CK-test bug msm
#1289 opened Apr 12, 2018 by thempel
17
Provide n_atoms and other useful selection stuff in featurizer feature-request
#267 opened Apr 20, 2015 by franknoe
2
Wanted: show_progress parameter in coordinates and thermo api functions coordinates feature-request thermo
#1341 opened Jul 12, 2018 by cwehmeyer
2 tasks
Koopman ignores dim setting bug coordinates
#1365 opened Sep 20, 2018 by euhruska
6
relative entropy between two MSM matrices feature-request
#1367 opened Sep 27, 2018 by euhruska
2
Improper LaTeX rendering in tutorial notebooks bug documentation
#1401 opened Feb 19, 2019 by p16i
1 of 4 tasks
1
SampledModel set_model_params overrides dt_model and conf parameters bug low-prio msm
#1431 opened Aug 27, 2019 by thempel
6
_bar_df wrong for loop boundary wontfix
#1523 opened Dec 16, 2021 by MaaikeG PyEMMA 3
3
Usage of pathlib in coordinates package design-discussion enhancement
#1546 opened Mar 1, 2022 by clonker
1
Issue deprecation warnings design-discussion documentation wontfix
#1558 opened Apr 27, 2022 by clonker
2 of 4 tasks
PyEMMA 3
2
Integrate dTRAM into deeptime wontfix
#1559 opened Apr 27, 2022 by clonker PyEMMA 3
2
Examples how to migrate code from current PyEMMA API to deeptime wontfix
#1560 opened Apr 27, 2022 by clonker
3 tasks
PyEMMA 3
1
Make data sources compatible to deeptime coordinates enhancement wontfix
#1562 opened Apr 27, 2022 by clonker PyEMMA 3
2
plot_contour colorbar tick labels don't adjust to changes to vmax and vmin
#1615 opened Sep 8, 2023 by marcushock
ProTip! Updated in the last three days: updated:>2025-03-03.