error in unitigging/3-overlapErrorAdjustment

[kevfengler227]

Still to make it all the way through with v1.7. Almost there. Encountering an error in unitigging/3-overlapErrorAdjustment. The job array index is too large for the job to be submitted. Any suggestions?

Thanks,
KF

cat red.jobSubmit-01.out
Job array index too large. Job not submitted.

#!/bin/sh

bsub
-M 5120 -R span[hosts=1] -n 4 -u pbadmin -q prod -P ga-assembly-bigspades -R rusage[mem=8000,scr=10000] -o red.%I.out
-J "red_EDE4N[1-65535]"

./red.sh 0 \

./red.jobSubmit-01.out 2>&1

[skoren]

You can increase the memory used for RED/OEA, try oeaMemory=64 redMemory=64 (assuming you have 64gb machines). You'll have to remove the 3-* folder in unitigging.