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NEWS.md

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microbiomeMarker 1.3.2

  • fix error on subgroup in lefse, #62, #55

microbiomeMarker 1.3.1 (2022-05-26)

  • Development version on Bioconductor.

microbiomeMarker 1.2.1 (2022-05-26)

  • Confounder analysis.
  • Comparison of different methods.

microbiomeMarker 1.2.0 (2022-04-27)

  • Released on Bioconductor 3.15.

microbiomeMarker 1.1.2 (2022-03-07)

  • Development version on Bioconductor
  • Use 3rd version of testthat to fix test error (use expect_snapshot() rather than expect_known_ouput).
  • Add two new arguments in plot_heatmap() scale_by_row and annotation_col to improve heatmap viaualization, #52.
  • Set slot marker_table to NULL if no marker was identified.
  • Add new import function import_picrust2() to import prediction functional table from PICRUSt2, and all DA functions support for PICRUSt2 output data.
  • Keep color consistent between legend and plot in cladogram, #42.
  • Add a new argument clade_label_font_size in plot_cladogram() to specify font size of clade label, #49.

microbiomeMarker 1.1.1 (2021-03-07)

  • Add a para only_marker in plot_cladogram to specify whether only show the markers or all features in the cladogram.
  • Fix a bug in run_test_multiple_groups(), error group names for enrich groups (2021-10-12, #48).
  • Fix a bug in plot_abundance(), error var name of effect size in marker_table (2021-10-17, #47).

microbiomeMarker 1.0.0 (2021-10-27)

  • Released on Bioconductor.

microbiomeMarker 0.99.1 (2021-10-11)

  • Accepted by Bioconductor.

microbiomeMarker 0.99.0 (2021-09-01)

  • Submitted to Bioconductor