Releases: lskatz/mashtree
Releases · lskatz/mashtree
v0.33
v0.32
- The mashtree executable is now
mashtree
instead ofmashtree.pl
- Quicktree is now required
- Increased precision of distances between genomes
- added mashtree module to testing environment
- Fixed some warnings related to the minimum abundance finder
- Fixed the
findDistances
bug by updating the SQL queries
Mashtree v0.29
- better documentation on cpan (?)
mashtree
instead ofmashtree.pl
- I'll have a deprecation message for several versions, until we are comfortable removing
mashtree.pl
- I'll have a deprecation message for several versions, until we are comfortable removing
treeDist()
method to describe a distance between two trees
v0.28
0.27
0.27a
- SQLite woes are probably fixed. No longer are we capped at 1000 genomes. Thank you @fbristow for the pull request. Thanks to everyone else for bringing it to my attention.
- Added test to make sure the database is working properly (
t/10_sqlite.t
) - QuickTree is now an option. If it is in your
PATH
then it will use QuickTree which produces the same tree but faster.
v0.26
For the minimum abundance filter (--min-depth 0
), using Mash for generating a histogram. Thanks for the tip @boydgreenfield.