mashtree_jackknife.pl: main::main: ERROR: one or more threads did not return an array of jack knife tree files as expected

[Rohit-Satyam]

I have some 300 fasta genomes and 6 nanopore fastq files and I was trying to run mashtree_jackknife. However I keep getting the following error

mashtree_jackknife.pl --reps 100  --numcpus 4 *.fastq *.fasta -- --min-depth 0 >  mashtree.jackknife.dnd

Thread 1 terminated abnormally: mashtree_jackknife.pl: Mashtree::mashDist: Can't take log of 0 
Stopped at /home/subudhak/miniconda3/envs/lib/perl5/site_perl/Mashtree.pm line 351.
mashtree_jackknife.pl: main::main: ERROR: one or more threads did not return an array of jack knife tree files as expected. 
Stopped at /home/subudhak/miniconda3/envs/bin/mashtree_jackknife.pl line 153.
Perl exited with active threads:
	3 running and unjoined
	0 finished and unjoined
	0 running and detached

However, mashtree runs successfully.
Besides, I wish to understand the use of --genomeSize option. These genomes are on an average 8.3Kb long so should I set it to 8300 ?

[lskatz]

• Yes, set it to --genomeSize 8300 to match 8.3Kb

Does this error occur consistently or was it stochastic? I wonder if you have any very small or zero byte files? What version do you have?

[lskatz]

Describe the bug
A clear and concise description of what the bug is.

To Reproduce
Steps to reproduce the behavior:

1. Go to '...'
2. Click on '....'
3. Scroll down to '....'
4. See error

Expected behavior
A clear and concise description of what you expected to happen.

Screenshots
If applicable, add screenshots to help explain your problem.

Desktop (please complete the following information):

• OS: [e.g. iOS]
• Version [e.g. v0.57, can be obtained by running mashtree --version.]
• which method did you install with? E.g., cpanm, git clone, ...

Additional context
Add any other context about the problem here.