v0.11.0

Kraken database outside of the container

v0.10.4

Minor fix to use native perl's which command instead of shell

v0.10.3

• Switched to the shovill assembly pipeline for the default workflow
• added effective coverage to assembly metrics report (number of bp mapped to the assembly divided by the assembly length). The nominal coverage is still calculated in read metrics (number of bp sequenced divided by expected genome length)
• Some fixes to documentation

v0.9.10

Acknowledged Blake; v0.9.10

v0.9.2

The Kraken analysis has been teased out of other plugins. Other kraken-dependent plugins all now depend on the plugin sn_kraken.pl to run first.

v0.8.14

reporting warnings and errors

v0.8.8

fixing up taxon column in summary table

v0.8.2

v0.8.2

v0.7.1

bumped the version to reflect better unit tests

unit testing active

v0.3

Merge branch 'master' of https://github.com/lskatz/SneakerNet