DESCRIPTION

Package: bcbioSmallRna
Title: small RNA-Seq Utilities
Description: Quality control and differential expression for bcbio-nextgen
    small RNA-seq experiments.
Version: 0.0.1
Date: 2019-03-22
Authors@R: c(
    person("Lorena", "Pantano",
           email = "lorena.pantano@gmail.com",
           role = c("aut", "cre")),
    person("Michael J.", "Steinbaugh",
           email = "mike@steinbaugh.com",
           role = "aut"),
    person("Harvard Chan Bioinformatics Core",
           email = "bioinformatics@hsph.harvard.edu",
           role = c("cph", "fnd")))
biocViews:
    DifferentialExpression,
    GeneExpression,
    QualityControl,
    ReportWriting,
    small RNASeq,
    miRNA,
    Visualization
URL:
    https://github.com/lpantano/bcbiosRnaseq
BugReports: https://github.com/lpantano/bcbiosRnaseq/issues
Depends: R (>= 3.5.0)
License: MIT + file LICENSE
LazyData: true
Imports:
    Biobase,
    BiocGenerics,
    circlize,
    ComplexHeatmap,
    cowplot,
    data.table,
    DEGreport (>= 1.13.4),
    DESeq2 (>= 1.16.0),
    dplyr,
    ggplot2 (>= 2.2.1),
    ggrepel,
    isomiRs,
    janitor,
    limma,
    methods,
    magrittr,
    MultiAssayExperiment,
    purrr,
    RColorBrewer,
    readr,
    reshape,
    rlang,
    rjson,
    S4Vectors,
    scales,
    stats,
    stringr,
    SummarizedExperiment,
    tibble,
    tidyr,
    utils,
    yaml
Suggests:
    BiocStyle,
    knitr,
    rmarkdown,
    testthat
Remotes:
    lpantano/isomiRs
Roxygen: list(markdown = TRUE)
RoxygenNote: 6.1.1
VignetteBuilder: knitr
Encoding: UTF-8