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Currently getting some errors related to images in Bioc version 3.20, possibly also related to new function containsOutOfMemoryData() from BiocGenerics. E.g. for Visium_humanDLPFC():
> containsOutOfMemoryData(spe)
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'object' in selecting a method for function 'containsOutOfMemoryData': no slot of name "metadata" for this object of class "LoadedSpatialImage"
> str(getImg(spe))
Formal class 'LoadedSpatialImage' [package "SpatialExperiment"] with 2 slots
..@ image: 'raster' chr [1:600, 1:600] "#aeb1b0ff" "#aeb2b0ff" "#adb1afff" "#adb1afff" ...
..@ NA : NULL
Warning message:
Not a validObject(): no slot of name "metadata" for this object of class "LoadedSpatialImage"
The text was updated successfully, but these errors were encountered:
Appears to be possible to fix by rebuilding objects from scratch using current Bioc version -- may need to rebuild and replace all existing EHub objects that have this issue
Currently getting some errors related to images in Bioc version 3.20, possibly also related to new function
containsOutOfMemoryData()
fromBiocGenerics
. E.g. forVisium_humanDLPFC()
:The text was updated successfully, but these errors were encountered: