datasets

[HelenaLC]

• check copyrights / permission to redistribute
• tabular summary of datasets used throughout the book
  • under background or in the appendix
  • source (URL), reference (if available)
  • scanning area (mm$^2$, # FOVs)
  • plexity, # cells, # molecules
• describe datasets in OSF repo
  (source, provenance etc.)
• deposit dataset in OSF repo
  • CosMx Mouse Brain1+2 1k-plex
  • CosMx Human Brain 6k-plex
  • Janesick Human Breast Cancer (Xenium, Visium, scRNA-seq)
  • Oliveria Human Colorectal Cancer (Xenium, Visium, HD, scRNA-seq)
• demo getting data from OSF & reading
  into R included in crs-workflow-xenvis +xen/vis workflow draft including data retrievely from OSF #90
  (to be replaced by SpatialExperimentIO)