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currently includes a reticulate-based example that runs COMMOT
(optimal-transport based, links to public resources like CellChatDB etc.)
this works locally, but not within the BiocBook framework;
should try whether using basilik solves the issue
also should add some downstream interpretation/visualization etc.
potentially include another method(s), though I am not aware of any in R;
else mention some others (that operate on single-cell level and use spatial info)
The text was updated successfully, but these errors were encountered:
reticulate
-based example that runsCOMMOT
(optimal-transport based, links to public resources like CellChatDB etc.)
BiocBook
framework;should try whether using
basilik
solves the issueelse mention some others (that operate on single-cell level and use spatial info)
The text was updated successfully, but these errors were encountered: