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img - cell-cell communication #53

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HelenaLC opened this issue Dec 18, 2024 · 0 comments
Open

img - cell-cell communication #53

HelenaLC opened this issue Dec 18, 2024 · 0 comments
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@HelenaLC
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HelenaLC commented Dec 18, 2024

  • currently includes a reticulate-based example that runs COMMOT
    (optimal-transport based, links to public resources like CellChatDB etc.)
  • this works locally, but not within the BiocBook framework;
    should try whether using basilik solves the issue
  • also should add some downstream interpretation/visualization etc.
  • potentially include another method(s), though I am not aware of any in R;
    else mention some others (that operate on single-cell level and use spatial info)
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