diff --git a/pints/__init__.py b/pints/__init__.py index 764d888..68d9e2c 100644 --- a/pints/__init__.py +++ b/pints/__init__.py @@ -2,7 +2,7 @@ # -*- coding: utf-8 -*- # PINTS: Peak Identifier for Nascent Transcripts Starts -# Copyright (c) 2019-2021 Li Yao at the Yu Lab. +# Copyright (c) 2019-2023 Yu Lab. # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/pints/calling_engine.py b/pints/calling_engine.py index c309761..6333fb7 100644 --- a/pints/calling_engine.py +++ b/pints/calling_engine.py @@ -2,7 +2,7 @@ # coding=utf-8 # PINTS: Peak Identifier for Nascent Transcripts Starts -# Copyright (c) 2019-2022. Li Yao at the Yu Lab. +# Copyright (c) 2019-2023 Yu Lab. # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/pints/extension_engine.py b/pints/extension_engine.py index 8cd9e62..c89b851 100644 --- a/pints/extension_engine.py +++ b/pints/extension_engine.py @@ -2,7 +2,7 @@ # coding=utf-8 # PINTS: Peak Identifier for Nascent Transcripts Starts -# Copyright (c) 2019-2022. Li Yao at the Yu Lab. +# Copyright (c) 2019-2023 Yu Lab. # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by @@ -17,7 +17,6 @@ import os import sys import logging -import warnings try: import numpy as np @@ -28,7 +27,6 @@ except ImportError as e: missing_package = str(e).replace("No module named '", "").replace("'", "") sys.exit("Please install %s first!" % missing_package) -warnings.filterwarnings("error") logger = logging.getLogger("PINTS - BoundaryExtender") __EXTENDED_FILE_TPL__ = "_element_{de_tag}bp.bed" diff --git a/pints/io_engine.py b/pints/io_engine.py index a3f1266..91a540e 100644 --- a/pints/io_engine.py +++ b/pints/io_engine.py @@ -2,7 +2,7 @@ # coding=utf-8 # # PINTS: Peak Identifier for Nascent Transcripts Starts -# Copyright (C) 2019-2021 Li Yao at the Yu Lab +# Copyright (C) 2019-2023 Yu Lab. # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/pints/qc_engine.py b/pints/qc_engine.py index 8010f03..a9e9d8e 100644 --- a/pints/qc_engine.py +++ b/pints/qc_engine.py @@ -2,7 +2,7 @@ import os.path # PINTS: Peak Identifier for Nascent Transcripts Starts -# Copyright (c) 2019-2022. Li Yao at the Yu Lab. +# Copyright (c) 2019-2023 Yu Lab. # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/pints/stats_engine.py b/pints/stats_engine.py index 26427dd..23befac 100644 --- a/pints/stats_engine.py +++ b/pints/stats_engine.py @@ -4,7 +4,7 @@ # Created on: 2019-08-07 # # PINTS: Peak Identifier for Nascent Transcripts Starts -# Copyright (C) 2019 Li Yao at the Yu Lab +# Copyright (C) 2019-2023 Yu Lab. # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/scripts/pints_boundary_extender b/scripts/pints_boundary_extender index 5f0ef33..a011ae2 100644 --- a/scripts/pints_boundary_extender +++ b/scripts/pints_boundary_extender @@ -2,7 +2,7 @@ # -*- coding: utf-8 -*- # PINTS: Peak Identifier for Nascent Transcripts Starts -# Copyright (c) 2019-2021 Li Yao at the Yu Lab. +# Copyright (c) 2019-2023 Yu Lab. # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/scripts/pints_caller b/scripts/pints_caller index 42721d2..e246870 100644 --- a/scripts/pints_caller +++ b/scripts/pints_caller @@ -2,7 +2,7 @@ # coding=utf-8 # PINTS: Peak Identifier for Nascent Transcripts Starts -# Copyright (c) 2019-2021 Li Yao at the Yu Lab. +# Copyright (c) 2019-2023 Yu Lab. # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/scripts/pints_normalizer b/scripts/pints_normalizer index 7e7736b..12ec14a 100644 --- a/scripts/pints_normalizer +++ b/scripts/pints_normalizer @@ -2,7 +2,7 @@ # coding=utf-8 # PINTS: Peak Identifier for Nascent Transcripts Starts -# Copyright (c) 2019-2021 Li Yao at the Yu Lab. +# Copyright (c) 2019-2023 Yu Lab. # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/scripts/pints_sample_qc b/scripts/pints_sample_qc index 91f8362..a1641f6 100644 --- a/scripts/pints_sample_qc +++ b/scripts/pints_sample_qc @@ -2,7 +2,7 @@ # coding=utf-8 # PINTS: Peak Identifier for Nascent Transcripts Starts -# Copyright (c) 2019-2022. Li Yao at the Yu Lab. +# Copyright (c) 2019-2023 Yu Lab. # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/scripts/pints_visualizer b/scripts/pints_visualizer index e3984b9..f19cb27 100644 --- a/scripts/pints_visualizer +++ b/scripts/pints_visualizer @@ -2,7 +2,7 @@ # coding=utf-8 # PINTS: Peak Identifier for Nascent Transcripts Starts -# Copyright (c) 2019-2021 Li Yao at the Yu Lab. +# Copyright (c) 2019-2023 Yu Lab. # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/tests/functional_test.py b/tests/functional_test.py index 05ddaba..33a26ff 100644 --- a/tests/functional_test.py +++ b/tests/functional_test.py @@ -1,5 +1,5 @@ # PINTS: Peak Identifier for Nascent Transcripts Starts -# Copyright (c) 2019-2022. Li Yao at the Yu Lab. +# Copyright (c) 2019-2023 Yu Lab. # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/tests/test_em.py b/tests/test_em.py index 398202c..2e79e25 100644 --- a/tests/test_em.py +++ b/tests/test_em.py @@ -1,5 +1,5 @@ # PINTS: Peak Identifier for Nascent Transcripts Sequencing -# Copyright (c) 2019-2022. Li Yao at the Yu Lab. +# Copyright (c) 2019-2023 Yu Lab. # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by