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keyword version is deprecated #11

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yates13 opened this issue Jan 30, 2024 · 0 comments
Open

keyword version is deprecated #11

yates13 opened this issue Jan 30, 2024 · 0 comments

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@yates13
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yates13 commented Jan 30, 2024

Once I go into the chips directory and run the snakemake command I get the following error, /scratch/Scel_ATACseq/Project/CHIPS/chips.snakefile:156: SyntaxWarning: invalid escape sequence '.'
#NOTE: Template class allows for _ in the variable names, we want to DISALLOW
SyntaxError in file /scratch/Scel_ATACseq/Project/CHIPS/./modules/trim_adapter.snakefile, line 73:
Keyword version is deprecated. Use conda or container directive instead (see docs). (trim_adapter.snakefile, line 73).
I believe I have properly edited the config, ref, and metasheet to my samples. i am in the CHIPS environment when running this so I was coping someone could help me trouble shoot.

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