Metadata parsing: database name not parsed

[sneumann]

Hi,

in an mzTab exported by [MS, MS:1003082, MS-DIAL, 3.98] the metabolite databases
are listed. In the metadata object metadata$database[[1]] the name "User-defined MSP library file" is missing.

Not sure if that is an issue with the generated mzTab or the reading by rmzTab.

Yours,
Steffen

MTD	database[1]	[,, User-defined MSP library file, ]
MTD	database[1]-prefix	MSP
MTD	database[1]-version	Unknown
MTD	database[1]-uri	file://C:/MoNA.msp

[nilshoffmann]

Thanks for reporting. I need to investigate this a bit more. Could be missing or incomplete implementation.

[sneumann]

The database information is also present in the example:
https://raw.githubusercontent.com/HUPO-PSI/mzTab/master/examples/2_0-Metabolomics_Release/msdial/lcmsms_dda_hydrophilic_height_mzTab.txt
Yours, Steffen