diff --git a/README.md b/README.md index 2878cba..a27cc26 100644 --- a/README.md +++ b/README.md @@ -11,7 +11,7 @@ [![Project generated with PyScaffold](https://img.shields.io/badge/-PyScaffold-005CA0?logo=pyscaffold)](https://pyscaffold.org/) [![PyPI-Server](https://img.shields.io/pypi/v/scranpy.svg)](https://pypi.org/project/scranpy/) [![Downloads](https://static.pepy.tech/badge/scranpy/month)](https://pepy.tech/project/scranpy) -![Unit tests](https://github.com/BiocPy/scranpy/actions/workflows/pypi-test.yml/badge.svg) +![Unit tests](https://github.com/libscran/scranpy/actions/workflows/pypi-test.yml/badge.svg) # scran, in Python @@ -92,7 +92,7 @@ print(first_markers) ## mt-Nd4l 3.2901199968427246 0.9342105263157894 -0.5903983282435646 0.30724666142969365 -0.5903983282435646 -0.5903983282435646 ``` -Users can also convert this into other [**BiocPy**](https://github.com/BiocPy) classes for easier manipulation: +Users can also convert the results into a `SingleCellExperiment` for easier manipulation: ```python print(results.to_singlecellexperiment()) @@ -111,8 +111,7 @@ print(results.to_singlecellexperiment()) ## metadata(0): ``` -We won't go over the theory here as it's explained more thoroughly in the book. -Also check out the [reference documentation](https://biocpy.github.io/scranpy) for more details. +Check out the [reference documentation](https://libscran.github.io/scranpy) for more details. ## Multiple batches