From 999c17f459d224e623ff4d517e027e50f82fb67b Mon Sep 17 00:00:00 2001 From: Heng Li Date: Tue, 10 Sep 2024 20:56:41 -0400 Subject: [PATCH] Release ropebwt3-3.6 (r217) --- NEWS.md | 16 ++++++++++++++++ README.md | 4 ++-- main.c | 2 +- 3 files changed, 19 insertions(+), 3 deletions(-) diff --git a/NEWS.md b/NEWS.md index a3dcbcf..5987584 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,19 @@ +Release 3.6-r217 (10 September 2024) +------------------------------------ + +Notable changes: + + * Bugfix: fixed a rare assertion failure. + + * Improvement: the `stat` command now works with the FMR format (#1). + + * Breaking: the `hapdiv` command now gives the counts of alleles up to edit + distance five. + +(3.6: 10 September 2024, r217) + + + Release 3.5-r203 (31 August 2024) --------------------------------- diff --git a/README.md b/README.md index 9911aa7..5d162fd 100644 --- a/README.md +++ b/README.md @@ -117,8 +117,8 @@ This provides a way to retrieve similar haplotypes from the index. The `hapdiv` command applies this algorithm to 101-mers in a query sequence and outputs 1) query name, 2) query start, 3) query end, 4) number of distinct alleles the 101-mer matches, 5) number of haplotypes with perfectly matching -the 101-mer, 6) number of haplotypes with edit distance 1 from the 101-mer, -7) with distance 2, 8) with distance 3 and 9) with distance 4 or higher. +the 101-mer, 6-10) number of haplotypes with edit distance 1-5 from the 101-mer, +and 11) with distance 6 or higher. ### Indexing diff --git a/main.c b/main.c index 898e1a1..90aaa21 100644 --- a/main.c +++ b/main.c @@ -5,7 +5,7 @@ #include "io.h" #include "ketopt.h" -#define RB3_VERSION "3.5-r216-dirty" +#define RB3_VERSION "3.6-r217" int main_build(int argc, char *argv[]); int main_merge(int argc, char *argv[]);