You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hello!
I encountered a memory shortage issue while using miniprot, but I checked that my available running memory on the server is 925G. My reference protein file size is 1.9G, but there are 4894429 entries.
The command I am using is miniprot - t50-- gff hap1. mpi/ protein_dir/ref50v.fa > ref50v.gff3
Error occurred [M::worker_pipeline::14471.449*36.87] mapped 7379 sequences [M::worker_pipeline::14492.793*36.88] mapped 6051 sequences [M::worker_pipeline::14511.779*36.88] mapped 6961 sequences [M::worker_pipeline::14540.144*36.88] mapped 6350 sequences [M::worker_pipeline::14584.366*36.89] mapped 5456 sequences [M::worker_pipeline::14608.433*36.90] mapped 6653 sequences [M::worker_pipeline::14632.797*36.91] mapped 7329 sequences [M::worker_pipeline::14695.161*36.87] mapped 7515 sequences [morecore] insufficient memory align50.sh: 行 1: 15443 已放弃 miniprot -t50 --gff hap1.mpi ../protein_dir/ref50v.fa > ref50v.gff3
May I ask if it is a problem with the settings of Minisrot itself? Can we increase its running memory?
I would greatly appreciate it if I could receive your reply as soon as possible.
The text was updated successfully, but these errors were encountered:
Hello!
I encountered a memory shortage issue while using miniprot, but I checked that my available running memory on the server is 925G. My reference protein file size is 1.9G, but there are 4894429 entries.
The command I am using is
miniprot - t50-- gff hap1. mpi/ protein_dir/ref50v.fa > ref50v.gff3
Error occurred
[M::worker_pipeline::14471.449*36.87] mapped 7379 sequences [M::worker_pipeline::14492.793*36.88] mapped 6051 sequences [M::worker_pipeline::14511.779*36.88] mapped 6961 sequences [M::worker_pipeline::14540.144*36.88] mapped 6350 sequences [M::worker_pipeline::14584.366*36.89] mapped 5456 sequences [M::worker_pipeline::14608.433*36.90] mapped 6653 sequences [M::worker_pipeline::14632.797*36.91] mapped 7329 sequences [M::worker_pipeline::14695.161*36.87] mapped 7515 sequences [morecore] insufficient memory align50.sh: 行 1: 15443 已放弃 miniprot -t50 --gff hap1.mpi ../protein_dir/ref50v.fa > ref50v.gff3
May I ask if it is a problem with the settings of Minisrot itself? Can we increase its running memory?
I would greatly appreciate it if I could receive your reply as soon as possible.
The text was updated successfully, but these errors were encountered: