diff --git a/miniprot.1 b/miniprot.1 index ddd0020..9871019 100644 --- a/miniprot.1 +++ b/miniprot.1 @@ -127,7 +127,7 @@ Print unmapped query proteins Output up to .RI min{ NUM , .BR -N } -alignments per query [100]. +alignments per query [1000]. .TP .BI -K \ NUM Query batch size [2M] diff --git a/miniprot.h b/miniprot.h index 13c6b5c..f1ed46d 100644 --- a/miniprot.h +++ b/miniprot.h @@ -3,7 +3,7 @@ #include -#define MP_VERSION "0.3-r145-dirty" +#define MP_VERSION "0.3-r146-dirty" #define MP_F_NO_SPLICE 0x1 #define MP_F_NO_ALIGN 0x2 diff --git a/options.c b/options.c index aee094b..d4a2a8b 100644 --- a/options.c +++ b/options.c @@ -39,7 +39,7 @@ void mp_mapopt_init(mp_mapopt_t *mo) mo->mask_len = INT32_MAX; mo->pri_ratio = 0.7f; mo->best_n = 50; - mo->out_n = 100; + mo->out_n = 1000; mo->kmer2 = 5; mo->go = 11, mo->ge = 1;