- Fix bug in compare app when selecting marker classes and plotting the map
- Change organlle profile plots to 25% and 75% quantiles
- Remap in aggregation app.
- New version for Bioc devel
- New version for Bioc release 3.19
- New version for Bioc devel 3.19
- Bioconductor release 3.18
- New version for Bioc devel
- Fix bug in DT table when fData column is a matrix see issue #117
- Bioconductor release 3.17
- New version for Bioc 3.17
- Fix bugs in table selection in explore and compare app
- Fix transparency slider in explore app
- Biocondutor release 3.16
- Explicitly add remap function for aggregation app
- Move LMB as maintainer
- Update URLs for Github repo
- Removed deprecated cogs icon to gears
- Fix bug in shinyhelper
- New version for Bioc 3.15
- Fixed issue #108 by removing scrollX known issue in DT package
- Update README
- fix #109 bug in pRolocVis when 'markers' is missing from fvarLabels
- fontawesome deprecated switch to cogs for sidebar
- fix bug in colour menu #110 attributed from shinyWidgets changing the class name from checkboxGroupButtons to checkbox-group-buttons
- New version for Bioc
- New version for Bioc
- added and renames buttons for downloading data
- fixed issue #104 that occurs when marker classes have only 1 member
- re-write of code to fix the breaking changes introduced by shinydashboardPlus v2
- depend on shinydashboardPlus 2.0.0
- fixed bug in pRolocVis which fails when no fcol explicitly called markers is not present
- added argument classProfiles to compare and explore apps so that users can choose to display class specific profiles
- fixed typos in vigentte
- fixed typos in explore and compare apps UIs
- New version for Bioc release
- fixed warning in profiles plot
- fixed colour matching in factet plot
- Apps updated to new shinydashboardPlus style
- Options to save plots as high res images
- User set colourpicker for creating figures
- Support for data export to csv
- Support batch import searching
- PCA app has been replaced with explore app
- New aggregation app
- Classify app removed
- Depend on latest pRoloc
- Keep only one maintainer
- Update email
- Update NEWS and pkgdown site
- Replace BiocInstaller biocLite mentions with BiocManager
- New version for Bioc devel
- New version for Bioc release
- Catch unnecessary idDT error produced on exit <2018-04-23 Mon>
- Update pRolocVis documentation do show how to use precomputed coordinates (see issue #92) <2018-03-16 Fri>
- Biocondutor release 3.6
- Rename the main app pca app <2017-08-21 Mon>
- Fix links in vignette to point to new html pRoloc vignettes <2017-05-30 Tue>
- Avoid computing dimensionality reduction at every reactive rendering, assuring that other, slower methods, in particular t-SNE, can be used <2017-05-20 Sat>
- New version for Bioc devel 3.6
- New version for Bioc release 3.5
- Fix broken documentation files <2017-01-18 Wed>
- New aggregation app added <2017-01-22 Wed>
- fixed remap=FALSE bug in compare app <2017-01-12 Thu>
- Added mirrorX and mirrorY to the compare app <2017-01-12 Thu>
- Update vignette use latest BiocStyle::html_document2() with floating table-f content <2016-12-30 Fri>
- Change to NEWS.md <2016-12-30 Fri>
- mirrorX and mirrorY are now ignored in pRolocVis - see issue #84 <2017-01-11 Wed>
- Remove accidental merging left-over <2016-12-13 Tue>
- Remove accidental call to browser
- Bioc devel 3.5
- Bioc release 3.4
- Various bug fixes <2016-10-07 Fri>
- Add DT version dependency (see issue #71) <2016-08-09 Tue>
- Fixed bug with matrix-f markers in fcol. Now if-ne-f the columns in the feature data is a matrix, it is converted to a vector using mrkMatToVec. This helps clarity and reduces wasted table space-f 1's and 0's. <2016-07-29 Fri>
- Fixed bug in pRolocVis_compare application. Same issue as above with passing matrix as a fcol which manifested as an extra issue with zooming. Now fixed. <2016-07-29 Fri>
- Fixed bug in pRolocVis in converting GO ids <2016-05-26 Thu>
- Removing plotMat2D app (closes issue #69) <2016-03-11 Fri>
- add package startup msg <2016-03-11 Fri>
- instruct users to install latest version from github
- Depend-n DT >= 0.1.40
- replace getLisacol by getStockcol (which are now Lisa's colours; since pRoloc version 1.11.9) <2016-02-16 Tue>
- update refs in vignette <2016-02-09 Tue>
- Updated pca app <2016-01-11 Mon>
- Updated vignette <2016-01-12 Tue>
- Fixed bugs, pca app renamed main app, removed profiles app <2016-01-14 Thu>
- new compare app <2016-01-30 Sat>
- updated vignette <2016-02-03 Wed>
- New shiny apps <2015-10-12 Mon>
- New vignette <2015-10-29 Thu>
- Fixed bugs and updated examples in classify app <2015-11-09 Mon>
- Bioc devel 3.3
- Bioc release 3.2
- Fix check warnings and errors <2015-07-20 Mon>
- new plotMat2D function <2015-05-20 Wed>
- Fix query search in pRolocVis, contributed by pierremj <2015-05-27 Wed>
- pRolocVis has new method arg <2015-05-29 Fri>
- Devel for Bioc 3.2
- Release for Bioc 3.1
- updating failing unit test [2015-04-03 Fri]
- fix R_HOME error [2015-02-26 Thu]
- don't require GNU make [2015-02-11 Wed]
- Fix bug with FoIs and multiple data sets (reported by Harriet Parsons) [2015-02-06 Fri]
- Update README with uptodate installation instructions [2014-10-14 Tue]
- handling and filtering missing value in input data [2014-10-21 Tue]
- Release for Bioc 3.0 [2014-10-14 Tue]
- added Video tag in DESCRIPTION [2014-10-07 Tue]
- Add screenshot to README [2014-09-05 Fri]
- fix bug when features-f fois are not present
- move data tab to the end
- Updated README [2014-09-04 Thu]
- Remove-ld R code file [2014-09-04]
- fix vignette error-n Windows (Dan Tenenbaum) [2014-08-26 Tue]
- selection and display-f multiple features-f interest in pRolocVis and pRolocComp [2014-08-13 Wed]
- display feature meta-data instead-f protein name when hovering [2014-07-27 Tue]
- better feature highlighting [2014-07-27 Tue] --nly 1 vignette [2014-07-27 Tue]
- support mirroring-f PCA plots in pRolocComp [2014-07-22 Tue]
- Update to latest knitcitations version and fix vignette [2014-07-15 Tue]
- add function pRolocComp [2014-06-24 Tue]
- multiple-bjects can be passed to pRolocVis by using a list [2014-06-03 Tue]
- improve query search (submit and select check box) [2014-06-02 Mon]
- add unit tests for helper functions and add manual unit test [2014-06-03 Tue]
- change access and assignment to-bject pRolocGUI_SearchResults in .GlobalEnv [2014-05-30 Fri]
- fix biocViews [2014-05-27 Tue]
- misc refactoring [2014-05-27 Tue]
- Bioc submission