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Segmentation fault (core dumped) #71

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iremdnzl opened this issue Jan 10, 2023 · 1 comment
Open

Segmentation fault (core dumped) #71

iremdnzl opened this issue Jan 10, 2023 · 1 comment

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@iremdnzl
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Here's the command line i use:
racon -m 8 -x 6 -g -8 -w 500 -t 4 ../all_reads.fastq Sample_ref.sam ~/REFERENCES/reference.fasta > RACON/racon_ref_Sample.fasta

This is the error:

[racon::Polisher::initialize] loaded target sequences 10.810765 s
[racon::Polisher::initialize] loaded sequences 2.468961 s
[racon::Polisher::initialize] loaded overlaps 1.142807 s
[racon::Polisher::initialize] aligning overlaps [====================] 1.910425 s
Segmentation fault (core dumped)

I have 28 G free memory. and this my sam file size:
618033983 Jan 10 12:48 Sample_ref.sam

What is wrong and what should I do?

@rvaser
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rvaser commented Jan 17, 2023

Can you please provide racon version you are using, and if it is from bioconda or compiled from source?

Best regards,
Robert

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