From c76c86052afaf84bc08c17bab6d7cb783caa0daf Mon Sep 17 00:00:00 2001 From: JeanMainguy Date: Tue, 5 Nov 2024 16:50:49 +0100 Subject: [PATCH] use debug for missing transtable in GFF parsing fct --- ppanggolin/annotate/annotate.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ppanggolin/annotate/annotate.py b/ppanggolin/annotate/annotate.py index 5de8ff21..9f84594e 100644 --- a/ppanggolin/annotate/annotate.py +++ b/ppanggolin/annotate/annotate.py @@ -1220,7 +1220,7 @@ def check_chevrons_in_start_and_stop( add_metadata_from_gff_file(contig_name_to_region_info, org, gff_file_path) if used_transl_table_arg: - logging.getLogger("PPanGGOLiN").info( + logging.getLogger("PPanGGOLiN").debug( f"transl_table tag was not found for {used_transl_table_arg} CDS " f"in {gff_file_path}. Provided translation_table argument value was used instead: {translation_table}." )