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NAMESPACE
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NAMESPACE
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import("methods")
importFrom("utils",
"head",
"tail",
"sessionInfo",
"capture.output",
"object.size")
importFrom("grDevices",
"as.raster",
"col2rgb",
"dev.capabilities",
"dev.cur",
"dev.flush",
"dev.hold",
"hcl.colors",
"hcl.pals",
"palette.colors",
"palette.pals",
"rgb",
"trans3d",
"xy.coords")
importFrom("graphics",
"Axis",
"abline",
"arrows",
"box",
"boxplot.default",
"co.intervals",
"grid",
"legend",
"mtext",
"par",
"plot.new",
"plot.window",
"plot.xy",
"persp",
"points",
"polygon",
"rasterImage",
"rect",
"strheight",
"strwidth",
"text.default",
"title")
importFrom("stats",
"aggregate",
"approx",
"coef",
"cor",
"cov",
"dnorm",
"fft",
"fitted",
"kmeans",
"loadings",
"loess",
"lowess",
"median",
"na.omit",
"nextn",
"nobs",
"optim",
"optimize",
"predict",
"qnorm",
"quantile",
"resid",
"rlnorm",
"rnorm",
"runif",
"runmed",
"smooth.spline",
"spline",
"update")
importFrom("stats4",
"plot",
"summary",
"update")
importFrom("Matrix",
"nnzero",
"rowSums",
"rowMeans",
"colSums",
"colMeans")
importFrom("digest",
"digest")
importFrom("irlba",
"irlba")
importFrom("parallel",
"makeCluster",
"stopCluster",
"clusterEvalQ",
"nextRNGStream",
"nextRNGSubStream")
import("BiocParallel")
import("BiocGenerics")
import("ProtGenerics")
exportClasses(
"drle",
"drle_fct",
"atoms",
"matter",
"matter_arr",
"matter_mat",
"matter_vec",
"matter_list",
"matter_str",
"matter_fct",
"sparse_arr",
"sparse_mat",
"sparse_vec")
export(
"drle",
"is.drle")
export(
"atoms",
"read_atom",
"write_atom",
"read_atoms",
"write_atoms")
export(
"matter",
"is.matter",
"as.matter",
"is.shared",
"as.shared",
"matter_arr",
"matter_mat",
"matter_vec",
"matter_fct",
"matter_list",
"matter_str",
"struct")
export(
"is.sparse",
"as.sparse",
"sparse_mat",
"sparse_vec")
exportMethods(
"as.altrep",
"as.vector",
"as.matrix",
"as.array",
"as.list",
"as.factor",
"as.data.frame")
export("as.vector")
exportMethods(
"adata",
"atomdata",
"atomdata<-",
"type",
"type<-",
"path",
"path<-",
"readonly",
"readonly<-")
exportMethods(
"aindex",
"atomindex",
"atomindex<-",
"pointers",
"pointers<-",
"domain",
"domain<-",
"tolerance",
"tolerance<-",
"sampler",
"sampler<-",
"nnzero",
"rowMaj")
exportMethods(
"fetch",
"flash",
"checksum")
exportMethods(
"describe_for_display",
"preview_for_display")
exportMethods(
"%*%",
"[",
"[<-",
"$",
"$<-",
"c",
"combine",
"cbind2",
"rbind2",
"lengths",
"length",
"dims",
"dim",
"dim<-",
"names",
"names<-",
"dimnames",
"dimnames<-",
"levels",
"levels<-",
"droplevels",
"Encoding",
"Encoding<-",
"t",
"crossprod",
"tcrossprod")
S3method("cbind", "matter_arr")
S3method("rbind", "matter_arr")
S3method("cbind", "sparse_arr")
S3method("rbind", "sparse_arr")
exportMethods(
"Arith",
"exp",
"log",
"log2",
"log10",
"log1p")
exportMethods(
"range",
"min",
"max",
"prod",
"sum",
"mean",
"var",
"sd",
"any",
"all",
"rowSums",
"rowMeans",
"colSums",
"colMeans")
export(
"s_range",
"s_min",
"s_max",
"s_prod",
"s_sum",
"s_mean",
"s_var",
"s_sd",
"s_any",
"s_all",
"s_nnzero",
"s_stat",
"s_colstats",
"s_rowstats",
"stat_c")
S3method("c", "stream_stat")
S3method("cbind", "stream_stat")
S3method("rbind", "stream_stat")
S3method("print", "stream_stat")
S3method("nobs", "stream_stat")
S3method("[", "stream_stat")
S3method("[[", "stream_stat")
S3method("stat_c", "stream_range")
S3method("stat_c", "stream_min")
S3method("stat_c", "stream_max")
S3method("stat_c", "stream_prod")
S3method("stat_c", "stream_sum")
S3method("stat_c", "stream_mean")
S3method("stat_c", "stream_var")
S3method("stat_c", "stream_sd")
S3method("stat_c", "stream_any")
S3method("stat_c", "stream_all")
S3method("stat_c", "stream_nnzero")
S3method("as.data.frame", "stream_stat")
exportMethods(
"rowsweep",
"colsweep",
"rowscale",
"colscale")
exportMethods(
"rowStats",
"colStats")
export(
".rowStats",
".colStats")
export(
"inpoly",
"rowdist",
"coldist",
"rowdist_at",
"coldist_at")
exportMethods(
"rowDists",
"colDists")
export(
".rowDists",
".colDists")
export(
"chunked_vec",
"chunked_mat",
"chunked_list",
"chunkify")
export(
"chunk_apply",
"chunk_rowapply",
"chunk_colapply",
"chunk_lapply",
"chunk_mapply",
"chunk_writer")
export(
"chunkApply",
"chunkLapply",
"chunkMapply")
export(
"uuid",
"tempmem",
"hex2raw",
"raw2hex")
S3method("[", "size_bytes")
S3method("print", "size_bytes")
S3method("format", "size_bytes")
export(
"size_bytes",
"sizeof",
"vm_used",
"shm_used",
"mem_realized")
export(
"approx1",
"filt1_ma",
"filt1_conv",
"filt1_gauss",
"filt1_bi",
"filt1_adapt",
"filt1_diff",
"filt1_guide",
"filt1_pag",
"filt1_sg",
"convolve_at",
"warp1_loc",
"warp1_dtw",
"warp1_cow",
"icor",
"roll",
"rollvec",
"binvec",
"findbins",
"downsample",
"estbase_loc",
"estbase_hull",
"estbase_snip",
"estbase_med",
"estnoise_sd",
"estnoise_mad",
"estnoise_diff",
"estnoise_quant",
"estnoise_filt",
"locmax",
"locmin",
"findpeaks",
"findpeaks_cwt",
"findridges",
"rescale_rms",
"rescale_sum",
"rescale_ref",
"rescale_range",
"rescale_iqr",
"ricker",
"cwt",
"peakwidths",
"peakareas",
"peakheights",
"binpeaks",
"mergepeaks",
"estres",
"simspec",
"simspec1")
export(
"approx2",
"filt2_ma",
"filt2_conv",
"filt2_gauss",
"filt2_bi",
"filt2_adapt",
"filt2_diff",
"filt2_guide",
"filtn_ma",
"filtn_conv",
"filtn_gauss",
"filtn_bi",
"filtn_adapt",
"warp2_trans",
"mi",
"enhance_adj",
"enhance_hist",
"enhance_adapt",
"knnmax",
"knnmin",
"findpeaks_knn",
"coscore",
"is_gridded",
"to_raster",
"to_raster3",
"estdim",
"trans2d")
export(
"array_ind",
"linear_ind")
export(
"isofun",
"isoclos")
export(
"pinv",
"avg")
export("seq_rel")
export("shingles")
export(
"RNGStreams",
"getRNGStream",
"setRNGStream")
export(
"cpal",
"cpals",
"dpal",
"dpals",
"add_alpha")
exportMethods("prcomp")
export(
"qrank",
"qorder",
"qselect",
"qmedian",
"qmad",
"reldiff",
"asearch",
"bsearch",
"kdtree",
"kdsearch",
"knnsearch",
"nnpairs")
S3method("print", "kdtree")
export(
"cv_do",
"mi_learn",
"predscore",
"rocscore",
"fastmap",
"nndsvd",
"nnmf_als",
"nnmf_mult",
"nscentroids",
"sgmix",
"sgmixn",
"prcomp_lanczos",
"pls_nipals",
"pls_simpls",
"pls_kernel",
"opls_nipals",
"vip")
S3method("fitted", "cv")
S3method("print", "cv")
S3method("fitted", "sgmix")
S3method("print", "sgmix")
S3method("logLik", "sgmix")
S3method("predict", "fastmap")
S3method("print", "fastmap")
S3method("predict", "nnmf")
S3method("print", "nnmf")
S3method("print", "prcomp_lanczos")
S3method("fitted", "nscentroids")
S3method("predict", "nscentroids")
S3method("print", "nscentroids")
S3method("logLik", "nscentroids")
S3method("fitted", "pls")
S3method("predict", "pls")
S3method("print", "pls")
S3method("coef", "opls")
S3method("residuals", "opls")
S3method("fitted", "opls")
S3method("predict", "opls")
S3method("print", "opls")
export(
"panel_grid",
"panel_dim",
"panel_get",
"panel_set",
"panel_next",
"panel_prev")
export(
"vizi",
"add_mark",
"add_facets",
"set_title",
"set_channel",
"set_coord",
"set_par",
"set_engine",
"as_facets",
"as_layers")
export(
"vizi_par",
"vizi_style",
"vizi_engine")
S3method("preplot", "vizi_plot")
S3method("preplot", "vizi_facets")
S3method("plot", "vizi_plot")
S3method("plot", "vizi_facets")
S3method("print", "vizi_plot")
S3method("print", "vizi_facets")
S3method("plot", "vizi_key")
S3method("plot", "vizi_colorkey")
S3method("plot", "vizi_points")
S3method("plot", "vizi_lines")
S3method("plot", "vizi_peaks")
S3method("plot", "vizi_text")
S3method("plot", "vizi_intervals")
S3method("plot", "vizi_rules")
S3method("plot", "vizi_bars")
S3method("plot", "vizi_boxplot")
S3method("plot", "vizi_image")
S3method("plot", "vizi_pixels")
S3method("plot", "vizi_voxels")
export(
"plot_signal",
"plot_image")
exportMethods(
"preplot",
"plot")
export(
"iQuote",
"parse_formula",
"eval_at",
"eval_exprs")
export(
"simple_logger",
"matter_logger")
export(
"matter_log",
"matter_message",
"matter_warn",
"matter_error")
export(
"mem",
"memcl",
"memtime",
"profmem")
export(
"matter_shared_resource",
"matter_shared_resource_list",
"matter_shared_resource_pool")
export("matter_defaults")
export(
"SnowfastParam",
"bpislocal",
"bplocalized",
"bptrystart",
"bptrystop")
useDynLib("matter", .registration=TRUE, .fixes="C_")