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NEWS
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NEWS
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CHANGES IN VERSION 1.3.6 [2024-10-24]
------------------------------------
BUG FIXES
o Fix writing scientific notation to imzML output
(note: only affected parsing, not precision)
CHANGES IN VERSION 1.3.5 [2024-10-16]
------------------------------------
NEW FEATURES
o Support for parallel writing with BiocParallel
o Added 'BPPARAM' argument to 'writeAnalyze()'
o Added 'BPPARAM' argument to 'writeImzML()'
SIGNIFICANT USER-VISIBLE CHANGES
o Return 'outdata' attribute on 'writeAnalyze()'
results with output 'matter' object
o Return 'outdata' attribute on 'writeImzML()'
results with output 'matter' object
CHANGES IN VERSION 1.3.4 [2024-9-7]
------------------------------------
SIGNIFICANT USER-VISIBLE CHANGES
o Parse imzML "binary data compression type" tags
o Compressed ibd data arrays are now attached as
raw byte arrays (_without_ decompression)
CHANGES IN VERSION 1.3.3 [2024-8-13]
------------------------------------
SIGNIFICANT USER-VISIBLE CHANGES
o Changed default 'mz.type' from "float32" to "float64"
CHANGES IN VERSION 1.3.2 [2024-7-31]
------------------------------------
SIGNIFICANT USER-VISIBLE CHANGES
o Renaming imzML files when 'asis=TRUE' now signals a warning
CHANGES IN VERSION 1.3.1 [2024-6-20]
------------------------------------
BUG FIXES
o Update broken unit test to reflect recent changes in 'matter'
CHANGES IN VERSION 1.2.1 [2024-5-7]
------------------------------------
SIGNIFICANT USER-VISIBLE CHANGES
o Allow multiple options to 'check' in 'parseImzML'
BUG FIXES
o Check ibd file size against imzML binary data array offsets
CHANGES IN VERSION 1.1.6 [2024-4-24]
------------------------------------
BUG FIXES
o Non-existent 'extraArrays' produce NULL instead of error
CHANGES IN VERSION 1.1.5 [2024-4-8]
------------------------------------
BUG FIXES
o Allow root tags in 'ImzMeta' (e.g., if a tag is unknown)
CHANGES IN VERSION 1.1.4 [2024-4-7]
------------------------------------
SIGNIFICANT USER-VISIBLE CHANGES
o Updated README.md
CHANGES IN VERSION 1.1.3 [2024-3-18]
------------------------------------
NEW FEATURES
o Made 'writeAnalyze()' an S4 generic
o Add optional 'positions' parameter to 'writeAnalyze()'
SIGNIFICANT USER-VISIBLE CHANGES
o Change 'writeAnalyze()' parameter 'mz' to 'domain'
CHANGES IN VERSION 1.1.2 [2024-3-13]
------------------------------------
BUG FIXES
o Remove case sensitivity when checking file extensions
CHANGES IN VERSION 1.1.1 [2024-2-18]
------------------------------------
BUG FIXES
o Fix error when setting 'ImzMeta' elements to NULL
CHANGES IN VERSION 0.99.2 [2023-9-13]
------------------------------------
NEW FEATURES
o Added support for additional binary data arrays
SIGNIFICANT USER-VISIBLE CHANGES
o Casefold checksums and UUIDs before comparison
CHANGES IN VERSION 0.99.1 [2023-8-29]
------------------------------------
SIGNIFICANT USER-VISIBLE CHANGES
o Added package-level 'CardinalIO' help page
CHANGES IN VERSION 0.99.0 [2023-8-12]
------------------------------------
SIGNIFICANT USER-VISIBLE CHANGES
o Update 'Analyze75' and 'ImzML' classes for Bioconductor
o Prepare for Bioconductor submission
CHANGES IN VERSION 0.7.0 [2023-8-11]
------------------------------------
NEW FEATURES
o Added 'parseAnalyze()' and 'writeAnalyze()'
o Support for Analyze 7.5 files
CHANGES IN VERSION 0.6.0 [2023-8-11]
------------------------------------
SIGNIFICANT USER-VISIBLE CHANGES
o Update vignette to include writing imzML files
CHANGES IN VERSION 0.5.0 [2023-8-11]
------------------------------------
NEW FEATURES
o New 'writeImzML()' method for 'ImzMeta'
o Support for writing the ".ibd" file
CHANGES IN VERSION 0.4.0 [2023-8-10]
------------------------------------
NEW FEATURES
o New 'ImzMeta' class
CHANGES IN VERSION 0.3.0 [2023-8-8]
-----------------------------------
NEW FEATURES
o Added 'extra' argument to parseImzML()
o Added 'ibd' argument to parseImzmL()
o Added checking of UUIDs and checksums
CHANGES IN VERSION 0.2.0 [2023-8-7]
-----------------------------------
NEW FEATURES
o Added 'writeImzML()' method
CHANGES IN VERSION 0.1.0 [2023-8-2]
-----------------------------------
NEW FEATURES
o Get parseImzML() working
o New 'ImzML' class