update_gmt5sar

#!/bin/bash

# Small script to download, compile and install trunk version of GMTSAR.
# First time installation is better to do it manually to address possible
# missing dependencies.
# Joaquin Escayo @ jescayo@ucm.es

# Configure the following variables to match your system preferences
S1_ORBIT_DIR=/home/subsidence/sar-db2/sentinel_precise_orbits
GMT_ORBIT_DIR=/opt/gmt5sar/orbits
INSTALL_DIR=/opt/gmt5sar/

# update SVN with TRUNK version:

#conda deactivate
mkdir $HOME/software
cd $HOME/software
rm -rf gmtsar
git clone https://github.com/gmtsar/gmtsar.git
cd gmtsar
sed -i '/set orb_dir/ c\  set orb_dir = "'$S1_ORBIT_DIR'"' gmtsar/csh/organize_files_tops_linux.csh
sed -i '/set orb_dir/ c\set orb_dir = "'$S1_ORBIT_DIR'"' gmtsar/csh/prep_data_linux.csh
make clean
read -p "Enter to compile"
autoconf
./configure --with-orbits-dir=$GMT_ORBIT_DIR --prefix=$INSTALL_DIR
make
read -p "Press any key to install"
make install

echo "DONE"