diff --git a/build-fail-blacklist b/build-fail-blacklist index d6e27fcbe9031..06f03912fa649 100644 --- a/build-fail-blacklist +++ b/build-fail-blacklist @@ -720,9 +720,6 @@ recipes/bioconductor-s4vectors/0.8.11 # r-bibitr missing -> missing V8 in conda-forge recipes/bioconductor-mirsm -# Build never completes -recipes/bioconductor-cancer - # Marked as build fails in bioconductor release 3.9 recipes/bioconductor-birte recipes/bioconductor-dsimer @@ -763,15 +760,9 @@ recipes/bioconductor-biocgenerics # Source seems to have moved recipes/discovar -# ld: unknown option: -T -recipes/bioconductor-lpsymphony - # Requires GTK+ recipes/bioconductor-hilbertvisgui -# fatal error: zlib.h: No such file or directory -recipes/bioconductor-rbowtie2 - # cannot find -llapack recipes/bioconductor-tofsims @@ -1120,6 +1111,7 @@ recipes/bioconductor-cagefightr recipes/bioconductor-cager recipes/bioconductor-camera recipes/bioconductor-camthc +recipes/bioconductor-cancer recipes/bioconductor-cancerclass recipes/bioconductor-cancerdata recipes/bioconductor-cancermutationanalysis diff --git a/recipes/bioconductor-lpsymphony/meta.yaml b/recipes/bioconductor-lpsymphony/meta.yaml index d0963fb5fe61e..19563d9602b0b 100644 --- a/recipes/bioconductor-lpsymphony/meta.yaml +++ b/recipes/bioconductor-lpsymphony/meta.yaml @@ -13,6 +13,7 @@ source: md5: acce764137f7f9a82443decd693b5efb build: number: 0 + skip: True # [osx] rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-rbowtie2/build.sh b/recipes/bioconductor-rbowtie2/build.sh index 9f9ee1efd6a6d..9777315fe97ad 100644 --- a/recipes/bioconductor-rbowtie2/build.sh +++ b/recipes/bioconductor-rbowtie2/build.sh @@ -6,7 +6,7 @@ echo -e "CC=$CC FC=$FC CFLAGS=$CFLAGS CXXFLAGS=$CXXFLAGS -CXX=$CXX +CXX=$CXX -I${PREFIX}/include -L${PREFIX}/lib CXX98=$CXX CXX11=$CXX CXX14=$CXX" > ~/.R/Makevars