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<!DOCTYPE HTML>
<!--
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Free for personal and commercial use under the CCA 3.0 license (html5up.net/license)
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<html>
<head>
<title>Clément Cazorla</title>
<meta charset="utf-8" />
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<span class="image avatar48"><img src="./images/moi.jpeg" alt="" /></span>
<h1 id="title">Clément Cazorla</h1>
<p>Postdoc in bioimage analysis </p>
</div>
<!-- Nav -->
<nav id="nav">
<ul>
<li><a href="#top" id="top-link"><span class="icon solid fa-home">Intro</span></a></li>
<li><a href="#portfolio" id="portfolio-link"><span class="icon solid fa-file-alt">Publications</span></a></li>
<li><a href="#YouTube_content" id="yt-link"><span class="fab fa-youtube">YouTube content</span></a></li>
<li><a href="#about" id="about-link"><span class="icon solid fa-user">About Me</span></a></li>
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<li><a href="https://www.linkedin.com/in/cl%C3%A9ment-cazorla/?msgControlName=reply_to_sender&msgConversationId=2-NzFhMGZkN2EtMjFjYS00YTEwLWIzODktZDhiODdkNGMwNWFkXzAxMA%3D%3D&msgOverlay=true" class="icon brands fa-linkedin"><span class="label">LinkedIn</span></a></li>
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<!-- Intro -->
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<header>
<h2 class="alt"> <strong>Hi! Welcome to my personal website!</strong></h2>
<p><strong>I am Clément, I am a postdoc researcher in bioimage analysis.</strong></p>
</header>
</div>
</section>
<!-- Portfolio -->
<section id="portfolio" class="two">
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<header>
<h2>Publications</h2>
</header>
<h3>Journal articles:</h3>
<ol reversed="" class="publication-list">
<li>
<a href="https://hal.science/hal-04330824" target="_blank"> Sketchpose: learning to segment cells with partial annotations</a>
<br> <strong> Cazorla C.</strong>, Munier N., Morin R., Weiss P.
<br> <i> HAL (2023) </i>
</li>
<li>
<a href="https://www.nature.com/articles/s41598-024-60916-8" target="_blank"> Svetlana a Supervised Segmentation Classifier for Napari</a>
<br> <strong> Cazorla C.</strong>, Morin R., Weiss P.
<br> <i> Scientific Reports (2024) </i>
</li>
<li>
<a href="https://doi.org/10.1016/j.compbiomed.2020.103755" target="_blank"> SegSRGAN: Super-resolution and segmentation using generative adversarial networks — Application to neonatal brain MRI</a>
<br> Delannoy Q., Pham C., <strong> Cazorla C.</strong>, Tor-Díez C., Dollé G., Meunier H., Bednarek N., Fablet R., Passat N., Rousseau F.
<br> <i> Computers in Biology and Medicine, Volume 120 (2020) </i>
</li>
<li>
<a href="https://doi.org/10.5201/ipol.2019.250" target="_blank"> Watervoxels</a>
<br> Cettour-Janet P., <strong> Cazorla C. </strong>, Machairas V., Delannoy Q., Bednarek N., Rousseau F., Decencière E., Passat N.
<br> <i> IPOL Journal · Image Processing On Line (2019) </i>
</li>
</ol>
<h3>Conference article:</h3>
<ol reversed="" class="publication-list">
<li> <a href="http://www.gretsi.fr/data/colloque/pdf/2022_cazorla801.pdf" target="_blank"> SVETLANA: UN CLASSIFIEUR DE SEGMENTATION POUR NAPARI </a>
<br> <strong> Cazorla C.</strong>, Morin R., Weiss P.
<br> <i> Colloque GRETSI, Nancy (2022) </i>
</li>
</ul>
</div>
</section>
<!-- YOUTUBE -->
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<h2>YouTube content</h2>
</header>
<iframe width="800" height="550"
src="https://www.youtube.com/embed/u_FKuHta-RE">
</iframe>
<header>
<h3>
YouTube tutorial of my Napari plugin called Svetlana.
</h3>
</header>
</div>
</section>
<!-- About Me -->
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<header>
<h2>About Me</h2>
</header>
<p>I obtained my engineering degree from ENSEEIHT (Toulouse) in electronics and signal processing in 2017, then I worked as an image processing engineer in the space industry (CNES, CS), and finally as a research engineer on MRI imaging at the university of Reims.</p>
<p>I did my PhD thesis in Toulouse (France), supervised by <a href="https://www.math.univ-toulouse.fr/~weiss/">Pierre Weiss</a> (CNRS), where I shared my time between the <a href="https://cbi-toulouse.fr/fr/">CBI</a> (Centre de Biologie Intégrative) of Toulouse, and <a href="https://www.imactiv-3d.com/">Imactiv-3D</a> company.
My PhD work were mainly oriented towards the exploration of minimalist convolutional neural networks for segmentation and classification tasks using a small amount of annotations for microscopy images.
With this in mind, I developed and keep maintaining two <a href="https://napari.org/stable/">Napari</a> plugin:
<ol class="list">
<li>
<a href="https://www.napari-hub.org/plugins/napari-svetlana">Svetlana</a>, which is dedicated to classifying segmentation masks by quickly annotating a small amount of ROI (see 3D result in the video below).</p>
</li>
<li>
<a href="https://www.napari-hub.org/plugins/napari-sketchpose">Sketchpose</a>, which is dedicated to segmenting cells and bacteria by quickly training an Omnipose-based CNN using sparse annotations.</p>
</li>
</ol>
<article class="item">
<video width="700px" height="700px" controls controlsList="nodownload">
<source src="video/anim3.mp4"
type="video/mp4">
</video>
<header>
<h3>
Svetlana classification of mesoderm and neural tube cells in a quail embryo 3D image acquired by a confocal microscope. Image provided by <a href="https://cbi-toulouse.fr/fr/equipe-benazeraf">Bertrand Benazeraf</a> (CNRS, CBI Toulouse).
</h3>
</header>
</article>
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<h2>Contact</h2>
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<li><h3 class="icon fa-envelope"><span class="label">Contact</span></h3>
<p>If you wish to get in touch, please send me an email at: <A HREF="mailto:[email protected]">[email protected]</A></p>
</li>
<li><h3 class="icon solid fa-home"><span class="label">Address</span></h3>
<strong>Center for Integrative Biology</strong><br>
169 rue Marianne Grunberg-Manago<br>
31400 Toulouse<br>
France
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