diff --git a/reference_database/Klebsiella_o_locus_primary_reference.gbk b/reference_database/Klebsiella_o_locus_primary_reference.gbk index 501cee5..44104de 100644 --- a/reference_database/Klebsiella_o_locus_primary_reference.gbk +++ b/reference_database/Klebsiella_o_locus_primary_reference.gbk @@ -4973,4 +4973,65 @@ ORIGIN 2101 caatacatca acatcatacc ccttttttgc caaagtagtg gcaagagcag tgaaagcagt 2161 accgataccg ccgttacgga caggcccctc aatgtccggc gtcattataa gaattttctt 2221 cat +// +LOCUS UGMM01000004 810 bp DNA UNK 01-JAN-1980 +DEFINITION Klebsiella pneumoniae strain NCTC11682 genome assembly, contig: + ERS670329SCcontig000004, whole genome shotgun sequence. +ACCESSION UGMM01000004 +VERSION UGMM01000004.1 GI:1440143122 +DBLINK BioProject: PRJEB6403 + BioSample: SAMEA3282963 +KEYWORDS WGS. +SOURCE Klebsiella pneumoniae + ORGANISM Klebsiella pneumoniae + Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; + Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella. +REFERENCE 1 + AUTHORS Doyle,S. + CONSRTM Pathogen Informatics + TITLE Direct Submission + JOURNAL Submitted (06-JUN-2018) WTSI, Pathogen Informatics, Wellcome Trust + Sanger Institute, CB10 1SA, United Kingdom +FEATURES Location/Qualifiers + source 1..3130 + /organism="Klebsiella pneumoniae" + /mol_type="genomic DNA" + /strain="NCTC11682" + /serovar="not available: to be reported later" + /db_xref="taxon:573" + /note="contig: ERS670329SCcontig000004" + /note="Extra genes: wbbZ" + /note="Sequence edited to trim wbbZ only, Tom Stanton + December 2023" + gene complement(1..810) + /locus_tag="NCTC11682_05451" + CDS complement(1..810) + /inference="ab initio prediction:Prodigal:2.60" + /codon_start=1 + /transl_table=11 + /product="Exopolysaccharide biosynthesis protein" + /protein_id="STV47229.1" + /db_xref="GI:1440147897" + /translation="MTNMKLKFDLLLKSYHLSHRFVYKANPGNAGDGVIASATYDFFER + NALTYIPYRDGERYSSETDILIFGGGGNLIEGLYSEGHDFIQNNIGKFHKVIIMPSTIR + GYSDLFINNIDKFVVFCRENITFDYIKSLNYEPNKNVFITDDMAFYLDLNKYLSLKPIY + KKQANCFRTDSESLTGDYKENNHDISLTWNGDYWDNEFLARNSTRCMINFLEEYKVVNT + DRLHVAILASLLGKEVNFYPNSYYKNEAVYNYSLFNRYPKTCFITAS" + /gene="wbbZ" + /locus_tag="Extra_genes_wbbZ_01_wbbZ" +ORIGIN + 1 tcaacttgcc gtaataaagc atgtttttgg ataacgatta aaaagtgaat aattgtaaac + 61 agcttcattt ttgtaatatg agttaggata gaagttgact tctttgccaa gcagagatgc + 121 taaaattgcc acatgcagcc tgtcggtatt gacaacttta tactcttcaa gaaagtttat + 181 catgcaacgg gtagaattac gcgccagaaa ttcattatcc caataatcgc cattccaggt + 241 gagcgaaata tcatgattgt tttctttata gtctccagtt agagattcgg agtccgttct + 301 gaagcagttg gcctgttttt tatagatggg tttaagtgac aggtatttat taagatcgag + 361 ataaaatgcc atatcatcag taatgaatac gttcttgttt ggttcgtagt tgagagattt + 421 aatataatcg aaggtgatat tttcgcgaca aaaaacaaca aacttatcaa tattgttgat + 481 gaataaatcg ctataccctc tgattgtcga cggcattatt attactttat gaaacttccc + 541 aatattattc tggataaagt catgaccttc agaatacaat ccttctatca ggtttcctcc + 601 gcctccaaaa attaaaatat cagtttcaga actgtagcgc tcgccatctc tgtaagggat + 661 ataggtaaga gcatttcgtt caaaaaagtc atatgtcgca gatgcaatta caccatcacc + 721 agcattacca gggtttgcct tatagacaaa tcgatgagat agatgataag attttagaag + 781 caaatcaaat tttaacttca tattggtcat // \ No newline at end of file diff --git a/reference_database/Klebsiella_o_locus_primary_reference.logic b/reference_database/Klebsiella_o_locus_primary_reference.logic index 4e61f49..273bab9 100644 --- a/reference_database/Klebsiella_o_locus_primary_reference.logic +++ b/reference_database/Klebsiella_o_locus_primary_reference.logic @@ -3,9 +3,9 @@ O1/O2v1 None O2a O1/O2v2 None O2afg O1/O2v3 None O2a O8 None O2a -O1/O2v1 wbbY O1 -O1/O2v2 wbbY O1 -O1/O2v3 wbbY O1 +O1/O2v1 wbbY O1a +O1/O2v2 wbbY O1a +O1/O2v3 wbbY O1a O8 wbbY O8 O1/O2v1 wbmVW O2ac O1/O2v2 wbmVW O2ac @@ -15,7 +15,13 @@ O1/O2v1 gmlABD O2aeh O1/O2v2 gmlABD O2aeh O1/O2v3 gmlABD O2aeh O8 gmlABD O2aeh -O1/O2v1 wbbY,wbmVW O1 (O2ac) -O1/O2v2 wbbY,wbmVW O1 (O2ac) -O1/O2v3 wbbY,wbmVW O1 (O2ac) -O8 wbbY,wbmVW O1 (O2ac) +O1/O2v1 wbbY,wbmVW O1a (O2ac) +O1/O2v2 wbbY,wbmVW O1a (O2ac) +O1/O2v3 wbbY,wbmVW O1a (O2ac) +O8 wbbY,wbmVW O1a (O2ac) +O1/O2v1 wbbY,wbbZ O1ab +O1/O2v2 wbbY,wbbZ O1ab +O1/O2v3 wbbY,wbbZ O1ab +O1/O2v1 wbbY,wbbZ,wbmVW O1ab (O2ac) +O1/O2v2 wbbY,wbbZ,wbmVW O1ab (O2ac) +O1/O2v3 wbbY,wbbZ,wbmVW O1ab (O2ac)