README.md

sleepy

Forward weak dormancy simulations with positive selection.

Installation

sudo apt update
sudo apt install -y libboost-all-dev

git clone https://github.com/kevinkorfmann/sleepy
cd sleepy
git clone https://github.com/tskit-dev/kastore
git submodule update --init --recursive

mkdir build
cd build
cmake ..
make

Include bin directory into your PATH by modiying the .bashrc file:

export PATH=$PATH:/home/*username*/projects/sleepy/bin   

Checkout the minimal_code_example.ipynb: https://github.com/kevinkorfmann/sleepy-analysis/blob/main/minimal_code_example.ipynb