CMakeLists.txt

project(sleepy)
cmake_minimum_required(VERSION 3.8)
set(CMAKE_CXX_STANDARD 17)
#set(CMAKE_CXX_FLAGS "-O3")

include(FetchContent)
FetchContent_Declare(
  googletest
  URL https://github.com/google/googletest/archive/609281088cfefc76f9d0ce82e1ff6c30cc3591e5.zip
)
# For Windows: Prevent overriding the parent project's compiler/linker settings
set(gtest_force_shared_crt ON CACHE BOOL "" FORCE)
FetchContent_MakeAvailable(googletest)

set(EXECUTABLE_OUTPUT_PATH "${PROJECT_SOURCE_DIR}/bin/")
set(tsk ./tskit/c/tskit)

include_directories(./kastore/c)

add_library(kastore SHARED ./kastore/c/kastore.c)

include_directories(./tskit/c)
add_library(tskit SHARED 
    ${tsk}/convert.c 
    ${tsk}/core.c 
    ${tsk}/genotypes.c
    ${tsk}/stats.c
    ${tsk}/tables.c
    ${tsk}/trees.c)

target_link_libraries(tskit kastore)

add_subdirectory(src)


enable_testing()

add_subdirectory(tests)