diff --git a/.github/workflows/run-snakemake.yml b/.github/workflows/run-snakemake.yml index 1b64fe6..7b0cf7e 100644 --- a/.github/workflows/run-snakemake.yml +++ b/.github/workflows/run-snakemake.yml @@ -33,18 +33,16 @@ jobs: - name: setup data shell: bash -el {0} run: | - export BASH_ENV=~/.bashrc mamba info pushd tests - bash setup.sh + bash -el setup.sh popd - name: run workflow shell: bash -el {0} run: | - export BASH_ENV=~/.bashrc pushd tests - bash test.sh + bash -el test.sh popd - name: cat all log files on failure