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RELEASE_NOTES.md

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###Release Notes

1.0.58 added new apps and utilities to support sequence set import.

1.0.57 added "metagenome" as option for assembly import. use released GenomeFileUtil API

1.0.56 Updated SRA Toolkit to 2.11.0.

1.0.55 Add exact_match_on field to the GFF Genome uploader.

1.0.54 Add exact_match_on field to the Genbank uploader.

1.0.53 Change casing of the ui-name field to sentence case for importers used by the Bulk Import cell.

1.0.52 Directly copy files in the scratch folder to staging image. Instead of using staging API.

1.0.51 Set valid_ws_types for SRA and interleaved reads import apps

1.0.50 Require at least one input file for SRA and non/interleaved reads

1.0.49 Add dynamic dropdown boxes for scientific_name ui input to address conflicting scientific_name/taxon_id issues. The dynamic dropdown will connect to the re_api_search service to match the ncbi_taxon_id for the scientific_name user types into the input box.

1.0.48 Fix import_fastq_noninterleaved... app always specifying interleaved=true

1.0.47 Add support for uploading files > 2GB to the staging service

1.0.46 Fix tests from new UIs for FASTQ/SRA Importers

1.0.45 Add github actions tests Add new FASTQ/SRA Importers

1.0.44 fix Dockerfile for gcc error

1.0.43 update wrong description for FASTQ/SRA importer Add file type checking to output of Import FASTQ/SRA file. This will enforce proper file names.

1.0.42 replace SBML model importer from fba_tools.sbml_file_to_model to SBMLTools.sbml_importer/integrate_model

1.0.41 Updated the contact information for the apps

1.0.40 Fixing algorithm to locate correct directory for fastq-dump result

1.0.39 Fixing metagenome gff fasta importer outputs and variable names

1.0.34 In the Batch Import apps, accept both /user_id and / as valid names of the root directory

1.0.33 restore visibility of Batch Import Apps up to beta

1.0.32 hiding Batch Import Apps so they can be backtracked to beta where they belong

1.0.31 Adding AnnotatedMetagenomeAssembly uploader

1.0.22: Added KBase paper citation in PLOS format

1.0.19: Convert module to Python 3

1.0.15: Add ConditionSet upload Make all uploaders use dynamic_dropdown type for staging area uploads

1.0.9: Added icons

1.0.5: Add FBAModel import functions (tsv/excel/sbml) added KBasePhenotypes.PhenotypeSet importer

1.0.3: replace FBAFileUtil with fba_tools module