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alleles.txt
148 lines (148 loc) · 5.87 KB
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alleles.txt
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159897 C 1 Lineage I lineage1
204118 G 1.1 - lineage1.1
1173345 T 1.2 - lineage1.2
494060 C 1.3 - lineage1.3
434389 T 1.4 - lineage1.4
3465611 A 1.5 - lineage1.5
2164632 C 1.5.1 - lineage1.5.1
2138308 A 1.5.2 - lineage1.5.2
220353 T 1.5.3 - lineage1.5.3
1411472 A 1.6 - lineage1.6
59422 C 1.6.1 - lineage1.6.1
452958 G 1.6.2 - lineage1.6.2
4108759 A 1.6.3 - lineage1.6.3
4180475 A 1.6.4 - lineage1.6.4
4967081 G 2 Lineage II lineage2
3922942 A 2.1 - lineage2.1
81464 T 2.1.1 - lineage2.1.1
765305 T 2.1.2 - lineage2.1.2
1148833 T 2.1.3 - lineage2.1.3
2751379 A 2.1.4 - lineage2.1.4
3209745 G 2.1.5 - lineage2.1.5
2163231 A 2.1.6 - lineage2.1.6
4969251 T 2.1.7 - lineage2.1.7
3277620 A 2.1.8 - lineage2.1.8
2964241 C 2.2 - lineage2.2
3231002 A 2.3 - lineage2.3
3209436 A 2.4 - lineage2.4
4418301 A 2.4.1 - lineage2.4.1
1995501 A 2.4.2 - lineage2.4.2
2693836 A 2.4.3 - lineage2.4.3
3171681 A 2.5 - lineage2.5
2163325 A 2.5.1 - lineage2.5.1
2137487 T 2.5.2 - lineage2.5.2
3943215 A 2.6 - lineage2.6
3759854 C 2.6.1 - lineage2.6.1
2575942 T 2.6.2 - lineage2.6.2
3709499 T 2.7 - lineage2.7
4853458 T 2.7.1 - lineage2.7.1
527464 T 2.7.2 - lineage2.7.2
398556 A 2.7.3 - lineage2.7.3
149526 A 2.7.4 - lineage2.7.4
2582118 G 2.8 - lineage2.8
1658839 T 2.8.1 Korea II lineage2.8.1
4759777 C 2.8.2 - lineage2.8.2
3295184 A 2.9 Latin America IIa lineage2.9
159867 A 2.9.1 Latin America IIa lineage2.9.1
2161563 A 2.9.2 Latin America IIa lineage2.9.2
3687240 T 2.1 - lineage2.1
693457 T 2.10.1 Latin America IIa lineage2.10.1
3815385 T 2.10.2 Latin America IIa lineage2.10.2
689910 T 2.10.3 Latin America IIa lineage2.10.3
3658948 A 2.10.4 Latin America IIa lineage2.10.4
103132 G 2.10.5 Latin America IIa lineage2.10.5
12848 G 2.10.6 Latin America IIa lineage2.10.6
4568931 T 2.10.7 Latin America IIa lineage2.10.7
2019490 C 2.10.8 Latin America IIa lineage2.10.8
3780988 T 2.10.9 Latin America IIa lineage2.10.9
4655571 T 2.11 Latin America IIb lineage2.11
1097146 T 2.11.1 Latin America IIb lineage2.11.1
3643604 A 2.11.2 Latin America IIb lineage2.11.2
3231524 A 2.11.3 Latin America IIb lineage2.11.3
4315218 A 2.11.4 Latin America IIb lineage2.11.4
1039929 A 2.11.5 Latin America IIb lineage2.11.5
815462 T 2.12 Latin America IIb lineage2.12
4021481 A 2.12.1 Latin America IIb lineage2.12.1
3835124 A 2.12.2 Latin America IIb lineage2.12.2
2142799 A 2.12.3 Latin America IIb lineage2.12.3
1071597 G 2.12.4 Latin America IIb lineage2.12.4
59602 T 3 Lineage III lineage3
2834293 C 3.1 - lineage3.1
149058 A 3.2 - lineage3.2
1632620 C 3.3 - lineage3.3
635476 A 3.4 Latin America III lineage3.4
950923 T 3.4.1 Latin America III lineage3.4.1
1424781 T 3.4.2 Latin America III lineage3.4.2
2591332 G 3.4.3 Latin America III lineage3.4.3
2565078 T 3.4.4 Latin America III lineage3.4.4
3579150 T 3.4.5 Latin America III lineage3.4.5
1058810 T 3.4.6 Latin America III lineage3.4.6
1236451 G 3.5 - lineage3.5
3618381 A 3.6 Central Asia III lineage3.6
484124 T 3.6.1 CipR_parent lineage3.6.1
4639269 G 3.6.1.1 CipR lineage3.6.1.1
3861202 C 3.6.1.1.1 CipR.SEA lineage3.6.1.1.1
954442 T 3.6.1.1.2 CipR.MSM5 lineage3.6.1.1.2
2335724 T 3.6.1.1.3 CipR lineage3.6.1.1.3
3314208 T 3.6.1.1.3.1 CipR.MSM1 lineage3.6.1.1.3.1
3338871 A 3.6.2 Central Asia III lineage3.6.2
4134508 T 3.6.3 Central Asia III lineage3.6.3
985650 A 3.6.4 Central Asia III lineage3.6.4
4080478 A 3.7 Global III lineage3.7
3834998 G 3.7.1 Global III lineage3.7.1
2362814 A 3.7.3 Global III lineage3.7.3
3835031 T 3.7.4 Global III lineage3.7.4
1770481 T 3.7.5 Global III lineage3.7.5
2464143 A 3.7.6 Global III lineage3.7.6
4079006 T 3.7.7 Global III lineage3.7.7
3890722 A 3.7.8 Global III lineage3.7.8
2244329 C 3.7.9 Global III lineage3.7.9
2831896 A 3.7.10 Global III lineage3.7.10
2564547 A 3.7.11 Global III lineage3.7.11
2347512 A 3.7.12 Global III lineage3.7.12
2057175 A 3.7.13 Global III lineage3.7.13
3649319 A 3.7.14 Global III lineage3.7.14
3780349 C 3.7.15 Global III lineage3.7.15
1103408 T 3.7.16 Global III lineage3.7.16
498700 T 3.7.17 Global III lineage3.7.17
2052270 T 3.7.18 Global III lineage3.7.18
4599365 T 3.7.19 Global III lineage3.7.19
442220 T 3.7.20 Global III lineage3.7.20
643175 T 3.7.21 Global III lineage3.7.21
3624938 C 3.7.22 Global III lineage3.7.22
2188269 T 3.7.23 Global III lineage3.7.23
12692 A 3.7.24 Global III lineage3.7.24
3336178 T 3.7.25 MSM4 lineage3.7.25
656895 A 3.7.26 Global III lineage3.7.26
4249495 A 3.7.27 Global III lineage3.7.27
4716168 T 3.7.28 Global III lineage3.7.28
4223696 T 3.7.29 Global III VN lineage3.7.29
4149688 A 3.7.29.1 Global III VN2 lineage3.7.29.1
4248085 T 3.7.29.1.1 Global III VN3 lineage3.7.29.1.1
1695964 A 3.7.29.1.1.1 Global III VN3.KH2 lineage3.7.29.1.1.1
2392221 T 3.7.29.1.1.2 Global III VN4 lineage3.7.29.1.1.2
985914 T 3.7.29.1.2 Global III VN2.MSM2 lineage3.7.29.1.2
1058820 T 3.7.29.1.2.1 Global III VN2.MSM2.Aus lineage3.7.29.1.2.1
3638083 T 3.7.29.1.3 Global III VN2.Hue lineage3.7.29.1.3
2151320 T 3.7.29.1.4 Global III VN2.KH1 lineage3.7.29.1.4
294523 T 3.7.29.1.4.1 Global III VN2.KH1.Aus lineage3.7.29.1.4.1
1138004 G 3.7.30 Global III Middle East III lineage3.7.30
4117025 T 3.7.30.1 Global III Middle East III lineage3.7.30.1
185962 T 3.7.30.2 Global III Middle East III lineage3.7.30.2
4478931 T 3.7.30.3 Global III Middle East III lineage3.7.30.3
3082193 A 3.7.30.4 Global III Israel III lineage3.7.30.4
228956 T 3.7.30.4.1 Global III OJC lineage3.7.30.4.1
459285 T 3.7.31 Global III lineage3.7.31
4620311 T 3.7.32 Global III lineage3.7.32
2162977 A 3.7.33 Global III lineage3.7.33
3158047 T 3.8 - lineage3.8
3578187 T 3.9 - lineage3.9
4386138 G 3.10 - lineage3.10
4807527 T 4 Lineage IV lineage4
5824 T 5 Lineage V lineage5
3861343 G 5.1.1 - lineage5.1.1
4840210 T 5.1.2 - lineage5.1.2
3768799 A 5.1.3 - lineage5.1.3
4617179 G 5.1.4 - lineage5.1.4
1539008 T 5.1.5 - lineage5.1.5
1268677 T 5.1.6 - lineage5.1.6