From 508d1c4c4146b33079be913ad4c5d3c946d77d2a Mon Sep 17 00:00:00 2001 From: LTLA Date: Tue, 27 Dec 2022 15:06:44 +1100 Subject: [PATCH] Added files for testing CRISPR screening with 10X. --- 10x-crispr/download.sh | 11 +++++++++++ 1 file changed, 11 insertions(+) create mode 100755 10x-crispr/download.sh diff --git a/10x-crispr/download.sh b/10x-crispr/download.sh new file mode 100755 index 0000000..9ad987c --- /dev/null +++ b/10x-crispr/download.sh @@ -0,0 +1,11 @@ +#!/bin/bash + +curl https://cf.10xgenomics.com/samples/cell-exp/6.0.0/SC3_v3_NextGem_DI_CRISPR_A549_5K_SC3_v3_NextGem_DI_CRISPR_A549_5K/SC3_v3_NextGem_DI_CRISPR_A549_5K_SC3_v3_NextGem_DI_CRISPR_A549_5K_count_sample_feature_bc_matrix.h5 > crispr_6.0.0-tenx.h5 + +curl https://cf.10xgenomics.com/samples/cell-exp/6.0.0/SC3_v3_NextGem_DI_CRISPR_A549_5K_SC3_v3_NextGem_DI_CRISPR_A549_5K/SC3_v3_NextGem_DI_CRISPR_A549_5K_SC3_v3_NextGem_DI_CRISPR_A549_5K_count_sample_feature_bc_matrix.tar.gz > crispr-mtx.tar.gz +tar -xvf crispr-mtx.tar.gz +rm crispr-mtx.tar.gz + +mv sample_feature_bc_matrix/barcodes.tsv.gz crispr_6.0.0-barcodes.tsv.gz +mv sample_feature_bc_matrix/features.tsv.gz crispr_6.0.0-features.tsv.gz +mv sample_feature_bc_matrix/matrix.mtx.gz crispr_6.0.0-matrix.mtx.gz