run_orthofinder usage issues

[xiaoguizz]

Hi,
When I call the existing Orthofinder result, there is something like this Error in run_orthofinder(gsParam = gsParam, verbose = TRUE) : orthofinder directory PWD/orthofinder exists, remove this before proceeding.My command is
gpar<- init_genespace(
wd = wd,
rawOrthofinderDir=rawOrthofinderDir,
nCores=5,
path2orthofinder = path2orthofinder,
path2mcscanx = path2mcscanx)

out <- run_genespace(gpar, overwrite = FALSE)
Thouk you,
Zhou

[jtlovell]

Was the orthofinder run done on exactly the genomes in /wd?