diff --git a/README.md b/README.md index 7e762e6..71d366f 100644 --- a/README.md +++ b/README.md @@ -59,3 +59,23 @@ CoverageExperiment(tracks, GRanges("II:450001-455000"), width = 5000) |> ``` ![](man/figures/cov.png) + +## Related projects + +A number of `CRAN`, `Bioconductor` or `GitHub` packages already exist to enable genomic track +data visualization, for instance: + +- `Gviz` [\[Bioconductor\]](https://www.bioconductor.org/packages/release/bioc/html/Gviz.html) +- `soGGi` [\[Bioconductor\]](https://www.bioconductor.org/packages/release/bioc/html/soGGi.html) +- `GenomicPlot` [\[Bioconductor\]](https://www.bioconductor.org/packages/release/bioc/html/GenomicPlot.html) +- `plotgardener` [\[Bioconductor\]](https://www.bioconductor.org/packages/release/bioc/html/plotgardener.html) +- `genomation` [\[Bioconductor\]](https://www.bioconductor.org/packages/release/bioc/html/genomation.html) +- `ggcoverage` [\[GitHub\]](https://github.com/showteeth/ggcoverage) +- `GenomicScores` [\[Bioconductor\]](https://www.bioconductor.org/packages/release/bioc/html/GenomicScores.html) + +Compared to these existing solutions, `tidyCoverage` directly extends `SummarizedExperiment` infrastructure and +follows [tidy "omics" principles](https://www.biorxiv.org/content/10.1101/2023.09.10.557072v2). It does +not directly provide **plotting** functionalities, but instead focuses on data recovery, structure and coercion, +using a familiar grammar and standard representation of the data. +This ensures seamless integration of genomic track investigation in exisiting +`Bioconductor` and data analysis workflows.