DESCRIPTION

Package: plyinteractions
Title: Extending tidy verbs to genomic interactions
Description: Operate on `GInteractions` objects as tabular data using 
    `dplyr`-like verbs. The functions and methods in `plyinteractions`
    provide a grammatical approach to manipulate `GInteractions`, to 
    facilitate their integration in genomic analysis workflows. 
Version: 1.3.1
Date: 2023-08-21
Authors@R: 
    c(person("Jacques", "Serizay", , "jacquesserizay@gmail.com",
        role = c("aut", "cre")
    ))
License: Artistic-2.0
URL: https://github.com/js2264/plyinteractions
BugReports: https://github.com/js2264/plyinteractions/issues
biocViews: Software,
    Infrastructure
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Imports:
    InteractionSet,
    GenomeInfoDb, 
    BiocGenerics, 
    GenomicRanges,
    plyranges, 
    IRanges,
    S4Vectors,
    rlang, 
    dplyr, 
    tibble,
    tidyselect,  
    methods, 
    utils
Suggests: 
    tidyverse, 
    BSgenome.Mmusculus.UCSC.mm10, 
    Biostrings, 
    BiocParallel, 
    scales, 
    HiContactsData, 
    rtracklayer,
    BiocStyle,
    covr,
    knitr,
    rmarkdown,
    sessioninfo,
    testthat (>= 3.0.0),
    RefManageR
Config/testthat/edition: 3
VignetteBuilder: knitr
RoxygenNote: 7.3.1
Collate: 
    'AllGenerics.R'
    'AllClasses.R'
    'add_pairdist.R'
    'anchor.R'
    'annotate.R'
    'arrange.R'
    'count-overlaps.R'
    'count.R'
    'data.R'
    'export.R'
    'filter-overlaps.R'
    'filter.R'
    'find-overlaps.R'
    'flank.R'
    'ginteractions-construct.R'
    'ginteractions-env.R'
    'ginteractions-getters.R'
    'ginteractions-scoping.R'
    'ginteractions-setters.R'
    'tbl_vars.R'
    'group_data.R'
    'group_by.R'
    'internals.R'
    'join-overlap-left.R'
    'methods-AnchoredPinnedGInteractions.R'
    'methods-DelegatingGInteractions.R'
    'methods-GroupedGInteractions.R'
    'methods-PinnedGInteractions.R'
    'methods-show.R'
    'mutate.R'
    'pair-granges.R'
    'pin.R'
    'plyinteractions.R'
    'reexports-dplyr.R'
    'reexports-plyranges.R'
    'reexports.R'
    'rename.R'
    'replace-anchors.R'
    'select.R'
    'shift.R'
    'slice.R'
    'stretch.R'
    'summarize.R'
LazyData: false
Depends: 
    R (>= 4.3.0)