diff --git a/.gitignore b/.gitignore index fb128c5..de89c8a 100644 --- a/.gitignore +++ b/.gitignore @@ -64,3 +64,4 @@ results* perfs_benchmark.log .env bench/ +.chromnn diff --git a/src/momics/config.py b/src/momics/config.py index f229784..8ce66de 100644 --- a/src/momics/config.py +++ b/src/momics/config.py @@ -2,9 +2,9 @@ import os from pathlib import Path from typing import Literal, Optional, Union - import tiledb + from .logging import logger DEFAULT_CONFIG_PATH = Path.home() / ".momics.ini" diff --git a/src/momics/export.py b/src/momics/export.py index a0b08a4..73fef6f 100644 --- a/src/momics/export.py +++ b/src/momics/export.py @@ -1,7 +1,6 @@ import logging import os from pathlib import Path - import numpy as np import pyBigWig import Bio diff --git a/src/momics/generator.py b/src/momics/generator.py index 266c78d..58cdf62 100644 --- a/src/momics/generator.py +++ b/src/momics/generator.py @@ -1,4 +1,4 @@ -from typing import Optional, Tuple +from typing import Optional, Tuple import numpy as np import pyranges as pr