DESCRIPTION

Package: VplotR
Type: Package
Title: Set of tools to make V-plots and compute footprint profiles
Version: 1.13.0
Date: 2021-11-21
Encoding: UTF-8
Authors@R: 
    c(person(given = "Jacques",
           family = "Serizay",
           role = c("aut", "cre"),
           email = "jacquesserizay@gmail.com",
           comment = c(ORCID = "0000-0002-4295-0624")))
Description: The pattern of digestion and protection from DNA nucleases such 
    as DNAse I, micrococcal nuclease, and Tn5 transposase can be used to 
    infer the location of associated proteins. This package contains useful 
    functions to analyze patterns of paired-end sequencing fragment density. 
    VplotR facilitates the generation of V-plots and footprint profiles 
    over single or aggregated genomic loci of interest.
URL: https://github.com/js2264/VplotR
BugReports: https://github.com/js2264/VplotR/issues
Depends:
    R (>= 4.0),
    GenomicRanges,
    IRanges,
    ggplot2
Imports: 
    cowplot,
    magrittr,
    GenomeInfoDb,
    GenomicAlignments,
    RColorBrewer,
    zoo,
    Rsamtools,
    S4Vectors,
    parallel,
    reshape2,
    methods, 
    graphics,
    stats
Suggests: 
    GenomicFeatures, 
    TxDb.Scerevisiae.UCSC.sacCer3.sgdGene,
    testthat,
    covr,
    knitr,
    rmarkdown,
    pkgdown
VignetteBuilder: knitr
biocViews:
    NucleosomePositioning,
    Coverage,
    Sequencing, 
    BiologicalQuestion, 
    ATACSeq, 
    Alignment
License: GPL (>= 3)
RoxygenNote: 7.2.3