From 099bc70c29d6dde0edafaf7b0008be4fe7851d14 Mon Sep 17 00:00:00 2001 From: js2264 Date: Mon, 30 Oct 2023 14:56:57 +0100 Subject: [PATCH] fix: biblio entries --- DESCRIPTION | 1 + _quarto.yml | 1 + data-representation.qmd | 2 ++ disseminating.qmd | 2 ++ interactions-centric.qmd | 2 ++ interoperability.qmd | 2 ++ matrix-centric.qmd | 2 ++ parsing.qmd | 2 ++ preamble.qmd | 2 ++ principles.qmd | 2 ++ topological-features.qmd | 4 +++- visualization.qmd | 2 ++ workflow-centros.qmd | 2 ++ workflow-chicken.qmd | 2 ++ workflow-multiomics.qmd | 2 ++ workflow-yeast.qmd | 2 ++ 16 files changed, 31 insertions(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 9b3109f..b54df11 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -39,6 +39,7 @@ Imports: sessioninfo Remotes: github::TaoYang-dev/hicrep + github::js2264/plyinteractions biocViews: HiC, DNA3DStructure diff --git a/_quarto.yml b/_quarto.yml index 52d319b..d1d7a68 100644 --- a/_quarto.yml +++ b/_quarto.yml @@ -49,6 +49,7 @@ format: author-meta: "Jacques Serizay" highlight-style: atom-one-dark.theme citations-hover: true + citation-location: margin toc: true toc-float: collapsed: false diff --git a/data-representation.qmd b/data-representation.qmd index 825c081..9759b59 100644 --- a/data-representation.qmd +++ b/data-representation.qmd @@ -1,4 +1,6 @@ --- +filters: + - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua reference-section-title: References bibliography: bibliography.bib --- diff --git a/disseminating.qmd b/disseminating.qmd index 9e33b8c..9448de9 100644 --- a/disseminating.qmd +++ b/disseminating.qmd @@ -1,4 +1,6 @@ --- +filters: + - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua reference-section-title: References bibliography: bibliography.bib --- diff --git a/interactions-centric.qmd b/interactions-centric.qmd index 03ea607..a6b9ce8 100644 --- a/interactions-centric.qmd +++ b/interactions-centric.qmd @@ -1,4 +1,6 @@ --- +filters: + - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua reference-section-title: References bibliography: bibliography.bib --- diff --git a/interoperability.qmd b/interoperability.qmd index 55051b8..1bd3770 100644 --- a/interoperability.qmd +++ b/interoperability.qmd @@ -1,4 +1,6 @@ --- +filters: + - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua reference-section-title: References bibliography: bibliography.bib --- diff --git a/matrix-centric.qmd b/matrix-centric.qmd index 7cd89cd..e1d190f 100644 --- a/matrix-centric.qmd +++ b/matrix-centric.qmd @@ -1,4 +1,6 @@ --- +filters: + - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua reference-section-title: References bibliography: bibliography.bib --- diff --git a/parsing.qmd b/parsing.qmd index a8c7687..5b5b798 100644 --- a/parsing.qmd +++ b/parsing.qmd @@ -1,4 +1,6 @@ --- +filters: + - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua reference-section-title: References bibliography: bibliography.bib --- diff --git a/preamble.qmd b/preamble.qmd index a3d2fd8..0f1e135 100644 --- a/preamble.qmd +++ b/preamble.qmd @@ -1,4 +1,6 @@ --- +filters: + - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua reference-section-title: References bibliography: bibliography.bib --- diff --git a/principles.qmd b/principles.qmd index 0b281ba..11bead8 100644 --- a/principles.qmd +++ b/principles.qmd @@ -1,4 +1,6 @@ --- +filters: + - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua reference-section-title: References bibliography: bibliography.bib --- diff --git a/topological-features.qmd b/topological-features.qmd index ec6a003..2ed1dec 100644 --- a/topological-features.qmd +++ b/topological-features.qmd @@ -1,8 +1,10 @@ --- -reference-section-title: References +filters: + - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua bibliography: bibliography.bib --- +reference-section-title: References # Finding topological features in Hi-C ```{r} diff --git a/visualization.qmd b/visualization.qmd index 819e6e1..f9d1196 100644 --- a/visualization.qmd +++ b/visualization.qmd @@ -1,4 +1,6 @@ --- +filters: + - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua reference-section-title: References bibliography: bibliography.bib --- diff --git a/workflow-centros.qmd b/workflow-centros.qmd index c98e23f..f1158d3 100644 --- a/workflow-centros.qmd +++ b/workflow-centros.qmd @@ -1,4 +1,6 @@ --- +filters: + - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua reference-section-title: References bibliography: bibliography.bib --- diff --git a/workflow-chicken.qmd b/workflow-chicken.qmd index d0206f3..9cecd13 100644 --- a/workflow-chicken.qmd +++ b/workflow-chicken.qmd @@ -1,4 +1,6 @@ --- +filters: + - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua reference-section-title: References bibliography: bibliography.bib --- diff --git a/workflow-multiomics.qmd b/workflow-multiomics.qmd index c953bd7..f656c19 100644 --- a/workflow-multiomics.qmd +++ b/workflow-multiomics.qmd @@ -1,4 +1,6 @@ --- +filters: + - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua reference-section-title: References bibliography: bibliography.bib --- diff --git a/workflow-yeast.qmd b/workflow-yeast.qmd index a7a582c..2e60585 100644 --- a/workflow-yeast.qmd +++ b/workflow-yeast.qmd @@ -1,4 +1,6 @@ --- +filters: + - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua reference-section-title: References bibliography: bibliography.bib ---