DESCRIPTION

Package: OHCA
Title: Orchestrating Hi-C analysis with Bioconductor
Version: 0.99.7
Date: 2023-04-14
Authors@R:
    c(person(given = "Jacques",
           family = "Serizay",
           role = c("aut", "cre"),
           email = "jacquesserizay@gmail.com",
           comment = c(ORCID = "0000-0002-4295-0624")))
Description: The primary aim of this book is to introduce the R user to Hi-C 
    analysis. This book starts with key concepts important for the analysis 
    of chromatin conformation capture and then presents Bioconductor tools that 
    can be leveraged to process, analyze, explore and visualize Hi-C data.
License: MIT + file LICENSE
URL: https://github.com/js2264/OHCA
BugReports: https://github.com/js2264/OHCA/issues
Depends:
    R (>= 4.4),
Imports:
    HiCExperiment,
    HiCool,
    HiContacts,
    HiContactsData,
    DNAZooData,
    fourDNData, 
    plyinteractions, 
    GenomicInteractions, 
    terra, 
    Rfast, 
    WGCNA, 
    diffHic, 
    strawr, 
    multiHiCcompare,
    TopDom, 
    GOTHiC, 
    BSgenome.Hsapiens.UCSC.hg38, 
    ggbio,
    cowplot,
    patchwork, 
    fs,
    knitr,
    BiocStyle, 
    sessioninfo 
biocViews:
    HiC,
    DNA3DStructure, 
    FunctionalGenomics
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
BiocType: Book
VignetteBuilder: knitr
LazyData: false