DESCRIPTION

Package: HiCool
Version: 1.5.1
Date: 2022-11-04
Title: HiCool
Authors@R:
    person("Jacques", "Serizay", email="jacquesserizay@gmail.com",
        role=c("aut", "cre"))
Description: HiCool provides an R interface to process and normalize Hi-C 
    paired-end fastq reads into .(m)cool files. 
    .(m)cool is a compact, indexed HDF5 file format specifically tailored for 
    efficiently storing HiC-based data. 
    On top of processing fastq reads, HiCool provides a convenient reporting 
    function to generate shareable reports summarizing Hi-C experiments and 
    including quality controls. 
License: MIT + file LICENSE
URL: https://github.com/js2264/HiCool
BugReports: https://github.com/js2264/HiCool/issues
Depends:
    R (>= 4.2),
    HiCExperiment
Imports:
    BiocIO,
    S4Vectors,
    GenomicRanges, 
    IRanges, 
    InteractionSet, 
    vroom, 
    basilisk,
    reticulate,
    rmarkdown,
    rmdformats,
    plotly,
    dplyr,
    stringr,
    sessioninfo, 
    utils
Suggests:
    HiContacts, 
    HiContactsData, 
    AnnotationHub,
    BiocFileCache,  
    BiocStyle,
    testthat,
    knitr,
    rmarkdown
biocViews:
    HiC,
    DNA3DStructure, 
    DataImport
Encoding: UTF-8
VignetteBuilder: knitr
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Config/testthat/edition: 3
StagedInstall: no