vignettes/HiContactsData.Rmd
HiContactsData.Rmd
library(HiContactsData)
The only function provided by HiContactsData package is -HiContactsData(). Several files are avaible using this +HiContactsData(). Several files are available using this function, namely:
HiContactsData()
sample
sessionInfo() -#> R Under development (unstable) (2023-11-08 r85496) +#> R Under development (unstable) (2024-01-09 r85796) #> Platform: x86_64-pc-linux-gnu #> Running under: Ubuntu 22.04.3 LTS #> @@ -205,50 +221,34 @@ Session info#> [1] stats graphics grDevices utils datasets methods base #> #> other attached packages: -#> [1] HiContactsData_1.5.2 ExperimentHub_2.11.0 AnnotationHub_3.11.0 +#> [1] HiContactsData_1.5.3 ExperimentHub_2.11.1 AnnotationHub_3.11.1 #> [4] BiocFileCache_2.11.1 dbplyr_2.4.0 BiocGenerics_0.49.1 #> [7] BiocStyle_2.31.0 #> #> loaded via a namespace (and not attached): -#> [1] KEGGREST_1.43.0 xfun_0.41 -#> [3] bslib_0.5.1 Biobase_2.63.0 -#> [5] bitops_1.0-7 vctrs_0.6.4 -#> [7] tools_4.4.0 generics_0.1.3 -#> [9] stats4_4.4.0 curl_5.1.0 -#> [11] AnnotationDbi_1.65.2 tibble_3.2.1 -#> [13] fansi_1.0.5 RSQLite_2.3.3 -#> [15] blob_1.2.4 pkgconfig_2.0.3 -#> [17] desc_1.4.2 S4Vectors_0.41.1 -#> [19] GenomeInfoDbData_1.2.11 lifecycle_1.0.4 -#> [21] compiler_4.4.0 stringr_1.5.1 -#> [23] Biostrings_2.71.1 textshaping_0.3.7 -#> [25] GenomeInfoDb_1.39.1 httpuv_1.6.12 -#> [27] htmltools_0.5.7 sass_0.4.7 -#> [29] RCurl_1.98-1.13 yaml_2.3.7 -#> [31] interactiveDisplayBase_1.41.0 crayon_1.5.2 -#> [33] pillar_1.9.0 pkgdown_2.0.7.9000 -#> [35] later_1.3.1 jquerylib_0.1.4 -#> [37] ellipsis_0.3.2 cachem_1.0.8 -#> [39] mime_0.12 tidyselect_1.2.0 -#> [41] digest_0.6.33 stringi_1.8.1 -#> [43] dplyr_1.1.3 purrr_1.0.2 -#> [45] bookdown_0.36 BiocVersion_3.19.1 -#> [47] rprojroot_2.0.4 fastmap_1.1.1 -#> [49] cli_3.6.1 magrittr_2.0.3 -#> [51] utf8_1.2.4 withr_2.5.2 -#> [53] filelock_1.0.2 promises_1.2.1 -#> [55] rappdirs_0.3.3 bit64_4.0.5 -#> [57] XVector_0.43.0 rmarkdown_2.25 -#> [59] httr_1.4.7 bit_4.0.5 -#> [61] png_0.1-8 ragg_1.2.6 -#> [63] memoise_2.0.1 shiny_1.7.5.1 -#> [65] evaluate_0.23 knitr_1.45 -#> [67] IRanges_2.37.0 rlang_1.1.2 -#> [69] Rcpp_1.0.11 xtable_1.8-4 -#> [71] glue_1.6.2 DBI_1.1.3 -#> [73] BiocManager_1.30.22 jsonlite_1.8.7 -#> [75] R6_2.5.1 zlibbioc_1.49.0 -#> [77] systemfonts_1.0.5 fs_1.6.3
Source: DESCRIPTION
DESCRIPTION
Serizay J (2023). +
Serizay J (2024). HiContactsData: HiContacts companion data package. -R package version 1.5.2, https://github.com/js2264/HiContactsData. +R package version 1.5.3, https://github.com/js2264/HiContactsData.
@Manual{, title = {HiContactsData: HiContacts companion data package}, author = {Jacques Serizay}, - year = {2023}, - note = {R package version 1.5.2}, + year = {2024}, + note = {R package version 1.5.3}, url = {https://github.com/js2264/HiContactsData}, }
yeast_wt
format
HiCool_log
cool
mcool
yeast_g1
yeast_g2m
pairs
hic
hicpro_matrix
hicpro_bed