diff --git a/.github/workflows/rworkflows.yml b/.github/workflows/rworkflows.yml index 0a6badb..e2712c1 100644 --- a/.github/workflows/rworkflows.yml +++ b/.github/workflows/rworkflows.yml @@ -17,6 +17,7 @@ name: rworkflows - RELEASE_** jobs: rworkflows: + permissions: write-all runs-on: ${{ matrix.config.os }} name: ${{ matrix.config.os }} (${{ matrix.config.r }}) container: ${{ matrix.config.cont }} @@ -27,27 +28,22 @@ jobs: - os: ubuntu-latest bioc: devel r: auto - cont: bioconductor/bioconductor_docker:devel - rspm: https://packagemanager.rstudio.com/cran/__linux__/focal/release - - os: ubuntu-latest - bioc: RELEASE_3_18 + cont: ghcr.io/bioconductor/bioconductor_docker:devel + rspm: ~ + - os: macOS-latest + bioc: release r: auto - cont: bioconductor/bioconductor_docker:RELEASE_3_18 - rspm: https://packagemanager.rstudio.com/cran/__linux__/focal/release - # - os: macOS-latest - # bioc: devel - # r: auto - # cont: ~ - # rspm: ~ + cont: ~ + rspm: ~ - os: windows-latest - bioc: devel + bioc: release r: auto cont: ~ rspm: ~ steps: - uses: neurogenomics/rworkflows@master with: - run_bioccheck: ${{ true }} + run_bioccheck: ${{ false }} run_rcmdcheck: ${{ true }} as_cran: ${{ true }} run_vignettes: ${{ true }} @@ -56,10 +52,9 @@ jobs: run_pkgdown: ${{ true }} has_runit: ${{ false }} has_latex: ${{ false }} - GITHUB_TOKEN: ${{ secrets.PAT_GITHUB }} + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} run_docker: ${{ false }} - docker_user: ${{ 'js2264' }} - docker_org: ${{ 'js2264' }} DOCKER_TOKEN: ${{ secrets.DOCKER_TOKEN }} runner_os: ${{ runner.os }} cache_version: cache-v1 + docker_registry: ghcr.io