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Yes TB-Profiler can be used for this. You would just have to specify the reference/gff and databases as in https://github.com/jodyphelan/tbdb/. I am currently workin on a tool which will support calling of species https://github.com/jodyphelan/NTM-Profiler. This is still in the early phase of development but eventually preformatted libraries should feature there for the common NTMs. |
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Hi Jody,
We have data from NTM samples that we would like to profiler for drug resistance mutations and get information about lineage etc. Could TB Profiler be used for this ? I assume we would need to specify the reference genome and the SNP database.
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