_pkgdown.yml

destination: docs

reference:
  - title: Overview
    desc: Overview of the camtrapR package
    contents:
      - '`camtrapR-package`'
  - title: Image organisation and management
    desc: Functions for image organisation and preprocessing
    contents:
      - '`createStationFolders`'
      - '`fixDateTimeOriginal`'
      - '`OCRdataFields`'
      - '`writeDateTimeOriginal`'
      - '`timeShiftImages`'
      - '`imageRename`'
      - '`addCopyrightTag`'
      - '`appendSpeciesNames`'
  - title: Species / individual identification
    desc: Functions to assist identification of species and individuals
    contents:
      - '`checkSpeciesNames`'
      - '`createSpeciesFolders`'
      - '`checkSpeciesIdentification`'
      - '`getSpeciesImages`'
  - title: Image data extraction
    desc: Functions to extract and tabulate data from images
    contents:
      - '`recordTable`'
      - '`recordTableIndividual`'
      - '`exifTagNames`'
      - '`addToPath`'
      - '`filterRecordTable`'
  - title: Data exploration and visualisation
    desc: Functions for plotting species activity, detection maps and exporting shapefiles
    contents:
      - '`detectionMaps`'
      - '`activityHistogram`'
      - '`activityDensity`'
      - '`activityRadial`'
      - '`activityOverlap`'
  - title: Data export
    desc: Functions to prepare occupancy and spatial capture-recapture analyses, and summarise surveys
    contents:
      - '`cameraOperation`'
      - '`detectionHistory`'
      - '`spatialDetectionHistory`'
      - '`surveyReport`'
      - '`communityModel`'
      - '`surveyDashboard`'
  - title: Community occupancy models
    desc: 
    contents: 
      - '`communityModel`'
      - '`commOccu-class`'
      - '`fit,commOccu-method`'
      - '`predict,commOccu-method`'
      - '`summary,commOccu-method`'
      - '`plot_coef`'
      - '`plot_effects`'
  - title: Sample data
    desc: Sample data sets included in camtrapR
    contents:
      - '`camtraps`'
      - '`recordTableSample`'
      - '`recordTableIndividualSample`'
      - '`camtrapsMultiSeason`'
      - '`recordTableSampleMultiSeason`'
      - '`recordTableIndividualSampleMultiSeason`'
      - '`timeShiftTable`'