RNA-seq analysis (reference based approach)

Repository

GAMMA

Objectives

Find genes associated with GxE in reponse to temperature
Identifiy putative splicing & SNPs
Find cis-eQTL
Find ancestry (Tremix)
Test with both genome v2 + transcriptome 41k transcripts (Le Luyer et al. submitted)
Test the mapping approach with GSNAP and split output function