diff --git a/HISTORY.md b/HISTORY.md index 4ade0ec..cfa99fe 100644 --- a/HISTORY.md +++ b/HISTORY.md @@ -2,6 +2,11 @@ Changelog ========= +(unreleased) +------------ +- Release: version 1.0.6 🚀 [jkobject] + + 1.0.6 (2024-09-04) ------------------ - Release: version 1.0.6 🚀 [jkobject] diff --git a/bengrn/VERSION b/bengrn/VERSION index af0b7dd..238d6e8 100644 --- a/bengrn/VERSION +++ b/bengrn/VERSION @@ -1 +1 @@ -1.0.6 +1.0.7 diff --git a/pyproject.toml b/pyproject.toml index 717bb84..420caeb 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -4,10 +4,12 @@ build-backend = "poetry.core.masonry.api" [tool.poetry] name = "bengrn" -version = "1.0.6" +version = "1.0.7" +license = "MIT" description = "benchmarking gene regulatory networks" -authors = [ "jkobject",] +authors = [ "jeremie kalfon"] readme = "README.md" +repository = "https://github.com/jkobject/benGRN" keywords = [ "scRNAseq", "GRN", "gene regulatory networks", "benchmark", "comp bio", "scPRINT",] [tool.poetry.dependencies] @@ -25,49 +27,32 @@ pandas = ">=2.0.0" grnndata = "*" omnipath = "*" dask-expr = "*" +pytorch-fast-transformers = { version = "*", optional = true } +pytest = { version = "^7.4.3", optional = true } +coverage = { version = "^7.3.2", optional = true } +flake8 = { version = "^6.1.0", optional = true } +black = { version = "^23.10.1", optional = true } +isort = { version = "^5.12.0", optional = true } +pytest-cov = { version = "^4.1.0", optional = true } +mypy = { version = "^1.6.1", optional = true } +gitchangelog = { version = "^3.0.4", optional = true } +mkdocs = { version = "^1.5.3", optional = true } [tool.poetry.extras] -dev = [ "pytest", "coverage", "flake8", "black", "toml", "isort", "pytest-cov", "mypy", "gitchangelog", "mkdocs", "mkdocs-git-revision-date-localized-plugin", "mkdocstrings", "mkdocs-git-authors-plugin", "mkdocs-jupyter", "mkdocstrings-python",] - -[tool.poetry.scripts] -bengrn = "bengrn.__main__:main" - -[tool.poetry.dependencies.pytest] -version = "1.0.6" -optional = true - -[tool.poetry.dependencies.coverage] -version = "1.0.6" -optional = true - -[tool.poetry.dependencies.flake8] -version = "1.0.6" -optional = true - -[tool.poetry.dependencies.black] -version = "1.0.6" -optional = true - -[tool.poetry.dependencies.isort] -version = "1.0.6" -optional = true - -[tool.poetry.dependencies.pytest-cov] -version = "1.0.6" -optional = true - -[tool.poetry.dependencies.mypy] -version = "1.0.6" -optional = true - -[tool.poetry.dependencies.gitchangelog] -version = "1.0.6" -optional = true - -[tool.poetry.dependencies.mkdocs] -version = "1.0.6" -optional = true - -[tool.poetry.dependencies.toml] -version = "1.0.6" -optional = true +dev = [ + "pytest", + "coverage", + "flake8", + "black", + "toml", + "isort", + "pytest-cov", + "mypy", + "gitchangelog", + "mkdocs", + "mkdocs-git-revision-date-localized-plugin", + "mkdocstrings", + "mkdocs-git-authors-plugin", + "mkdocs-jupyter", + "mkdocstrings-python", +] \ No newline at end of file